Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.02□□□□□ -2.25
USH1CQ9Y6N9 AC010608.3-201ENST00000625048 527 ntBASIC1.02□□□□□ -2.25
USH1CQ9Y6N9 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
USH1CQ9Y6N9 AL159152.1-201ENST00000635019 2587 ntBASIC1.02□□□□□ -2.25
USH1CQ9Y6N9 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 RNA5SP327-201ENST00000362494 101 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 RNU6-1141P-201ENST00000364520 107 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 MTATP6P16-201ENST00000434543 526 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 AL606662.1-201ENST00000445763 553 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 GAPDHP17-201ENST00000449858 1001 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 ATP5J2P3-201ENST00000451550 258 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 RPL31P3-201ENST00000458430 332 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 RPL39P28-201ENST00000465655 155 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 AC116562.3-201ENST00000506136 177 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 AC079140.3-201ENST00000511111 550 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 RNU6-1220P-201ENST00000517126 108 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 AC022616.3-201ENST00000523940 148 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 AC068587.5-201ENST00000528506 175 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 ZNF321P-202ENST00000550843 495 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 CYP3A52P-201ENST00000563326 91 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 MTCO2P2-201ENST00000591258 225 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 AC107304.1-201ENST00000604229 296 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 AC009878.1-201ENST00000621819 340 ntBASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.01□□□□□ -2.25
USH1CQ9Y6N9 SNORD113-6-201ENST00000363345 75 ntBASIC1□□□□□ -2.25
USH1CQ9Y6N9 Y_RNA.324-201ENST00000365165 102 ntBASIC1□□□□□ -2.25
USH1CQ9Y6N9 AL161935.2-201ENST00000414627 60 ntBASIC1□□□□□ -2.25
USH1CQ9Y6N9 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC1□□□□□ -2.25
USH1CQ9Y6N9 AC244505.5-201ENST00000443639 207 ntBASIC1□□□□□ -2.25
USH1CQ9Y6N9 Z73417.1-201ENST00000447373 778 ntBASIC1□□□□□ -2.25
USH1CQ9Y6N9 RNU7-14P-201ENST00000459331 62 ntBASIC1□□□□□ -2.25
USH1CQ9Y6N9 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC1□□□□□ -2.25
USH1CQ9Y6N9 AL133373.1-201ENST00000497098 94 ntBASIC1□□□□□ -2.25
USH1CQ9Y6N9 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC1□□□□□ -2.25
USH1CQ9Y6N9 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC1□□□□□ -2.25
USH1CQ9Y6N9 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC1□□□□□ -2.25
USH1CQ9Y6N9 RNA5SP481-201ENST00000516814 122 ntBASIC1□□□□□ -2.25
USH1CQ9Y6N9 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC1□□□□□ -2.25
USH1CQ9Y6N9 RAB11AP2-201ENST00000545905 639 ntBASIC1□□□□□ -2.25
USH1CQ9Y6N9 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC1□□□□□ -2.25
USH1CQ9Y6N9 MIR3923-201ENST00000579521 83 ntBASIC1□□□□□ -2.25
USH1CQ9Y6N9 AP003465.2-201ENST00000602571 373 ntBASIC1□□□□□ -2.25
USH1CQ9Y6N9 AC138749.5-201ENST00000611461 208 ntBASIC1□□□□□ -2.25
USH1CQ9Y6N9 AC027807.2-201ENST00000616099 408 ntBASIC1□□□□□ -2.25
USH1CQ9Y6N9 AC116165.2-201ENST00000616705 206 ntBASIC1□□□□□ -2.25
USH1CQ9Y6N9 MTND5P35-201ENST00000557537 1720 ntBASIC1□□□□□ -2.25
USH1CQ9Y6N9 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 RNU6-1019P-201ENST00000364424 107 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 SNORD115-7-201ENST00000365306 82 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 RNU6-53P-201ENST00000365367 106 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 RNU6-1065P-201ENST00000384513 106 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 RNU6-331P-201ENST00000384724 107 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 EIF1P1-201ENST00000421436 341 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 CST2P1-201ENST00000425770 87 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 AL512286.1-201ENST00000439244 400 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 HMGN2P9-201ENST00000476875 229 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 AC104136.1-201ENST00000512969 394 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 Y_RNA.672-201ENST00000516289 104 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 SCARNA24.1-201ENST00000516465 137 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 RNU5F-4P-201ENST00000516581 114 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 RNA5SP102-201ENST00000516865 106 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 AC021231.3-201ENST00000558497 370 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 AC015688.6-201ENST00000577737 104 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 SNORA59B-202ENST00000578183 701 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 AP005136.1-201ENST00000579765 429 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 BNIP3P16-201ENST00000589779 534 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 MIR3976-201ENST00000606807 139 ntBASIC0.99□□□□□ -2.25
USH1CQ9Y6N9 MTND4P14-201ENST00000435799 1354 ntBASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 RNU6-428P-201ENST00000362942 107 ntBASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 RNU5F-7P-201ENST00000363696 115 ntBASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 U3.9-201ENST00000363823 204 ntBASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 Y_RNA.191-201ENST00000363972 113 ntBASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 RNU1-96P-201ENST00000364163 162 ntBASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 Y_RNA.224-201ENST00000364308 111 ntBASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 Y_RNA.269-201ENST00000364685 89 ntBASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 RNU6-336P-201ENST00000364891 107 ntBASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 SNORD31B-201ENST00000364977 69 ntBASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 SNORA20.2-201ENST00000383922 131 ntBASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 MIR513B-201ENST00000385136 84 ntBASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 RNA5SP201-201ENST00000410316 124 ntBASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 ARL5AP1-201ENST00000418991 388 ntBASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 NDUFA5P4-201ENST00000436704 385 ntBASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 AC004854.1-201ENST00000440356 349 ntBASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 RNU6-1098P-201ENST00000516772 96 ntBASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
USH1CQ9Y6N9 HSPE1P4-201ENST00000550617 308 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 143.3 ms