Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 HMGN2P15-201ENST00000585707 270 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 AL391813.1-201ENST00000603098 260 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 MIR3658-201ENST00000636291 56 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 AL773545.4-201ENST00000637262 310 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 AL513478.4-201ENST00000641636 310 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 LINC01355-201ENST00000566551 5444 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
USP3Q9Y6I4 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.2□□□□□ -1.74
USP3Q9Y6I4 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.2□□□□□ -1.74
USP3Q9Y6I4 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
USP3Q9Y6I4 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
USP3Q9Y6I4 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.19□□□□□ -1.74
USP3Q9Y6I4 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
USP3Q9Y6I4 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
USP3Q9Y6I4 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
USP3Q9Y6I4 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
USP3Q9Y6I4 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
USP3Q9Y6I4 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.19□□□□□ -1.74
USP3Q9Y6I4 AF127577.6-201ENST00000623352 2191 ntBASIC4.19□□□□□ -1.74
USP3Q9Y6I4 ZNF962P-201ENST00000443465 3140 ntBASIC4.19□□□□□ -1.74
USP3Q9Y6I4 Y_RNA.24-201ENST00000362508 103 ntBASIC4.19□□□□□ -1.74
USP3Q9Y6I4 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.19□□□□□ -1.74
USP3Q9Y6I4 RNA5SP399-201ENST00000364003 117 ntBASIC4.19□□□□□ -1.74
USP3Q9Y6I4 Y_RNA.310-201ENST00000365063 113 ntBASIC4.19□□□□□ -1.74
USP3Q9Y6I4 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
USP3Q9Y6I4 RNU6-44P-201ENST00000384045 107 ntBASIC4.19□□□□□ -1.74
USP3Q9Y6I4 RNU6-628P-201ENST00000410675 107 ntBASIC4.19□□□□□ -1.74
USP3Q9Y6I4 AC006461.1-201ENST00000412637 326 ntBASIC4.19□□□□□ -1.74
USP3Q9Y6I4 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.19□□□□□ -1.74
USP3Q9Y6I4 RPS3P1-201ENST00000456781 192 ntBASIC4.19□□□□□ -1.74
USP3Q9Y6I4 RNA5SP310-201ENST00000459084 116 ntBASIC4.19□□□□□ -1.74
USP3Q9Y6I4 S100A11P1-201ENST00000477525 312 ntBASIC4.19□□□□□ -1.74
USP3Q9Y6I4 RPS29P2-201ENST00000479278 136 ntBASIC4.19□□□□□ -1.74
USP3Q9Y6I4 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC4.19□□□□□ -1.74
USP3Q9Y6I4 RNU4-57P-201ENST00000515980 135 ntBASIC4.19□□□□□ -1.74
USP3Q9Y6I4 AC090877.1-201ENST00000561418 344 ntBASIC4.19□□□□□ -1.74
USP3Q9Y6I4 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC4.19□□□□□ -1.74
USP3Q9Y6I4 MIR6875-201ENST00000617506 72 ntBASIC4.19□□□□□ -1.74
USP3Q9Y6I4 MIR6500-201ENST00000622700 86 ntBASIC4.19□□□□□ -1.74
USP3Q9Y6I4 AP001340.1-201ENST00000624405 217 ntBASIC4.19□□□□□ -1.74
USP3Q9Y6I4 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
USP3Q9Y6I4 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
USP3Q9Y6I4 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
USP3Q9Y6I4 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
USP3Q9Y6I4 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.18□□□□□ -1.74
USP3Q9Y6I4 RNU6-153P-201ENST00000364422 104 ntBASIC4.18□□□□□ -1.74
USP3Q9Y6I4 SNORD87-201ENST00000364849 89 ntBASIC4.18□□□□□ -1.74
USP3Q9Y6I4 RNU6-728P-201ENST00000365375 104 ntBASIC4.18□□□□□ -1.74
USP3Q9Y6I4 RNU6-969P-201ENST00000383900 105 ntBASIC4.18□□□□□ -1.74
USP3Q9Y6I4 RNU6-1056P-201ENST00000383996 107 ntBASIC4.18□□□□□ -1.74
USP3Q9Y6I4 RNY3P5-201ENST00000384127 102 ntBASIC4.18□□□□□ -1.74
USP3Q9Y6I4 Y_RNA.563-201ENST00000384707 108 ntBASIC4.18□□□□□ -1.74
USP3Q9Y6I4 SNORA3C-201ENST00000408792 125 ntBASIC4.18□□□□□ -1.74
USP3Q9Y6I4 AC083863.1-201ENST00000438811 231 ntBASIC4.18□□□□□ -1.74
USP3Q9Y6I4 RNU7-197P-201ENST00000458836 62 ntBASIC4.18□□□□□ -1.74
USP3Q9Y6I4 AP002884.2-201ENST00000471647 395 ntBASIC4.18□□□□□ -1.74
USP3Q9Y6I4 AC025445.1-201ENST00000502728 300 ntBASIC4.18□□□□□ -1.74
USP3Q9Y6I4 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.18□□□□□ -1.74
USP3Q9Y6I4 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC4.18□□□□□ -1.74
USP3Q9Y6I4 RN7SL703P-201ENST00000578485 302 ntBASIC4.18□□□□□ -1.74
USP3Q9Y6I4 MIR4724-201ENST00000579485 89 ntBASIC4.18□□□□□ -1.74
USP3Q9Y6I4 MIR4286-201ENST00000580651 93 ntBASIC4.18□□□□□ -1.74
USP3Q9Y6I4 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.18□□□□□ -1.74
USP3Q9Y6I4 MIR6076-201ENST00000617521 113 ntBASIC4.18□□□□□ -1.74
USP3Q9Y6I4 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC4.18□□□□□ -1.74
USP3Q9Y6I4 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
USP3Q9Y6I4 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.18□□□□□ -1.74
USP3Q9Y6I4 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
USP3Q9Y6I4 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.18□□□□□ -1.74
USP3Q9Y6I4 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
USP3Q9Y6I4 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
USP3Q9Y6I4 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.17□□□□□ -1.74
USP3Q9Y6I4 MIR367-201ENST00000362299 68 ntBASIC4.17□□□□□ -1.74
USP3Q9Y6I4 RNU4-15P-201ENST00000362613 141 ntBASIC4.17□□□□□ -1.74
USP3Q9Y6I4 RNU4-10P-201ENST00000364383 140 ntBASIC4.17□□□□□ -1.74
USP3Q9Y6I4 Y_RNA.542-201ENST00000384641 111 ntBASIC4.17□□□□□ -1.74
USP3Q9Y6I4 MIR15B-201ENST00000385045 98 ntBASIC4.17□□□□□ -1.74
USP3Q9Y6I4 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC4.17□□□□□ -1.74
USP3Q9Y6I4 RNA5SP504-201ENST00000410676 117 ntBASIC4.17□□□□□ -1.74
USP3Q9Y6I4 AIMP1P2-201ENST00000425294 312 ntBASIC4.17□□□□□ -1.74
USP3Q9Y6I4 AC010469.1-201ENST00000463864 576 ntBASIC4.17□□□□□ -1.74
USP3Q9Y6I4 Y_RNA.686-201ENST00000516548 134 ntBASIC4.17□□□□□ -1.74
USP3Q9Y6I4 RNA5SP179-201ENST00000517284 121 ntBASIC4.17□□□□□ -1.74
USP3Q9Y6I4 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC4.17□□□□□ -1.74
USP3Q9Y6I4 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC4.17□□□□□ -1.74
USP3Q9Y6I4 AC091167.4-201ENST00000605079 184 ntBASIC4.17□□□□□ -1.74
USP3Q9Y6I4 U6.115-201ENST00000636045 103 ntBASIC4.17□□□□□ -1.74
USP3Q9Y6I4 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
USP3Q9Y6I4 AC016588.2-201ENST00000632484 3021 ntBASIC4.17□□□□□ -1.74
USP3Q9Y6I4 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
USP3Q9Y6I4 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.17□□□□□ -1.74
USP3Q9Y6I4 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.17□□□□□ -1.74
USP3Q9Y6I4 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
USP3Q9Y6I4 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP3Q9Y6I4 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP3Q9Y6I4 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP3Q9Y6I4 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP3Q9Y6I4 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP3Q9Y6I4 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
USP3Q9Y6I4 RNU6-1210P-201ENST00000363775 107 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms