Protein–RNA interactions for Protein: Q9ULD4

BRPF3, Bromodomain and PHD finger-containing protein 3, humanhuman

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRPF3Q9ULD4 AP000553.6-201ENST00000641242 118 ntBASIC4.29□□□□□ -1.72
BRPF3Q9ULD4 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
BRPF3Q9ULD4 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.29□□□□□ -1.72
BRPF3Q9ULD4 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
BRPF3Q9ULD4 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC4.29□□□□□ -1.72
BRPF3Q9ULD4 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
BRPF3Q9ULD4 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
BRPF3Q9ULD4 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
BRPF3Q9ULD4 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
BRPF3Q9ULD4 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC4.28□□□□□ -1.72
BRPF3Q9ULD4 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
BRPF3Q9ULD4 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
BRPF3Q9ULD4 RNU6-626P-201ENST00000363354 107 ntBASIC4.28□□□□□ -1.72
BRPF3Q9ULD4 SNORA73.2-201ENST00000364946 201 ntBASIC4.28□□□□□ -1.72
BRPF3Q9ULD4 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
BRPF3Q9ULD4 AC245291.1-201ENST00000419501 328 ntBASIC4.28□□□□□ -1.72
BRPF3Q9ULD4 PIGPP3-201ENST00000425307 415 ntBASIC4.28□□□□□ -1.72
BRPF3Q9ULD4 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC4.28□□□□□ -1.72
BRPF3Q9ULD4 RNU7-110P-201ENST00000516891 62 ntBASIC4.28□□□□□ -1.72
BRPF3Q9ULD4 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.28□□□□□ -1.72
BRPF3Q9ULD4 AK6P2-201ENST00000549020 471 ntBASIC4.28□□□□□ -1.72
BRPF3Q9ULD4 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC4.28□□□□□ -1.72
BRPF3Q9ULD4 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.28□□□□□ -1.72
BRPF3Q9ULD4 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.28□□□□□ -1.72
BRPF3Q9ULD4 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 RNU6-873P-201ENST00000363833 107 ntBASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 Y_RNA.274-201ENST00000364714 101 ntBASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 RNU6-20P-201ENST00000384106 107 ntBASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 RNU6-21P-201ENST00000384710 107 ntBASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 SNORA53-201ENST00000391141 249 ntBASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 AL133475.1-201ENST00000404414 305 ntBASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 RNU2-49P-201ENST00000410666 184 ntBASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 AC009969.1-201ENST00000438726 172 ntBASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 AC117440.1-201ENST00000474107 571 ntBASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 SNORA40.9-201ENST00000515895 93 ntBASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 MIR4643-201ENST00000577473 78 ntBASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 AC006130.2-201ENST00000586202 326 ntBASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 AL365434.2-201ENST00000607979 234 ntBASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
BRPF3Q9ULD4 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC4.26□□□□□ -1.73
BRPF3Q9ULD4 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC4.26□□□□□ -1.73
BRPF3Q9ULD4 RNU6-961P-201ENST00000363893 105 ntBASIC4.26□□□□□ -1.73
BRPF3Q9ULD4 RNA5SP42-201ENST00000364278 115 ntBASIC4.26□□□□□ -1.73
BRPF3Q9ULD4 Y_RNA.297-201ENST00000364950 91 ntBASIC4.26□□□□□ -1.73
BRPF3Q9ULD4 CD24P4-201ENST00000382840 243 ntBASIC4.26□□□□□ -1.73
BRPF3Q9ULD4 RNU6-748P-201ENST00000384648 107 ntBASIC4.26□□□□□ -1.73
BRPF3Q9ULD4 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC4.26□□□□□ -1.73
BRPF3Q9ULD4 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC4.26□□□□□ -1.73
BRPF3Q9ULD4 AC010095.1-201ENST00000443543 144 ntBASIC4.26□□□□□ -1.73
BRPF3Q9ULD4 AL031183.1-201ENST00000457667 207 ntBASIC4.26□□□□□ -1.73
BRPF3Q9ULD4 AC093663.1-201ENST00000497190 394 ntBASIC4.26□□□□□ -1.73
BRPF3Q9ULD4 RRN3P3-201ENST00000549207 578 ntBASIC4.26□□□□□ -1.73
BRPF3Q9ULD4 AC105137.2-201ENST00000569073 466 ntBASIC4.26□□□□□ -1.73
BRPF3Q9ULD4 AC010999.1-201ENST00000611856 324 ntBASIC4.26□□□□□ -1.73
BRPF3Q9ULD4 SNORD98-201ENST00000636377 67 ntBASIC4.26□□□□□ -1.73
BRPF3Q9ULD4 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.26□□□□□ -1.73
BRPF3Q9ULD4 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
BRPF3Q9ULD4 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 Y_RNA.29-201ENST00000362570 113 ntBASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 Y_RNA.200-201ENST00000364018 102 ntBASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 RNU6-326P-201ENST00000365480 107 ntBASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 AL139156.1-201ENST00000412785 841 ntBASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 AC138623.1-201ENST00000418060 216 ntBASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 DBIP2-201ENST00000419076 262 ntBASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 AC112220.1-201ENST00000434628 355 ntBASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 PRELID3BP1-201ENST00000457142 540 ntBASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 RN7SL601P-201ENST00000471221 293 ntBASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 AIG1P1-201ENST00000503376 148 ntBASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 SNORA70.18-201ENST00000516696 98 ntBASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 RNU2-31P-201ENST00000516954 155 ntBASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 AC039056.2-201ENST00000622261 511 ntBASIC4.25□□□□□ -1.73
BRPF3Q9ULD4 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.24□□□□□ -1.73
BRPF3Q9ULD4 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.24□□□□□ -1.73
BRPF3Q9ULD4 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
BRPF3Q9ULD4 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.24□□□□□ -1.73
BRPF3Q9ULD4 RNU5F-3P-201ENST00000363767 117 ntBASIC4.24□□□□□ -1.73
BRPF3Q9ULD4 Y_RNA.570-201ENST00000384750 101 ntBASIC4.24□□□□□ -1.73
BRPF3Q9ULD4 Y_RNA.595-201ENST00000410403 105 ntBASIC4.24□□□□□ -1.73
BRPF3Q9ULD4 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC4.24□□□□□ -1.73
BRPF3Q9ULD4 CYCSP48-201ENST00000417124 323 ntBASIC4.24□□□□□ -1.73
BRPF3Q9ULD4 AL035423.1-201ENST00000420331 213 ntBASIC4.24□□□□□ -1.73
BRPF3Q9ULD4 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms