Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC092807.2-201ENST00000609367 243 ntBASIC1.89□□□□□ -2.11
LHX3Q9UBR4 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
LHX3Q9UBR4 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.88□□□□□ -2.11
LHX3Q9UBR4 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
LHX3Q9UBR4 MIR9-3-201ENST00000385084 90 ntBASIC1.88□□□□□ -2.11
LHX3Q9UBR4 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
LHX3Q9UBR4 BTF3L4P2-201ENST00000392798 346 ntBASIC1.88□□□□□ -2.11
LHX3Q9UBR4 SRIP3-201ENST00000413200 219 ntBASIC1.88□□□□□ -2.11
LHX3Q9UBR4 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.88□□□□□ -2.11
LHX3Q9UBR4 RPL23AP95-201ENST00000426806 265 ntBASIC1.88□□□□□ -2.11
LHX3Q9UBR4 AL133396.1-201ENST00000432048 687 ntBASIC1.88□□□□□ -2.11
LHX3Q9UBR4 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.88□□□□□ -2.11
LHX3Q9UBR4 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.88□□□□□ -2.11
LHX3Q9UBR4 AC079804.2-201ENST00000490376 200 ntBASIC1.88□□□□□ -2.11
LHX3Q9UBR4 RPS29P11-201ENST00000496507 171 ntBASIC1.88□□□□□ -2.11
LHX3Q9UBR4 Y_RNA.654-201ENST00000497848 106 ntBASIC1.88□□□□□ -2.11
LHX3Q9UBR4 AC016632.1-201ENST00000503994 196 ntBASIC1.88□□□□□ -2.11
LHX3Q9UBR4 RNU6-1069P-201ENST00000516612 133 ntBASIC1.88□□□□□ -2.11
LHX3Q9UBR4 SNORA31.16-201ENST00000516773 139 ntBASIC1.88□□□□□ -2.11
LHX3Q9UBR4 AC025423.5-201ENST00000550230 219 ntBASIC1.88□□□□□ -2.11
LHX3Q9UBR4 AC007375.1-201ENST00000554513 578 ntBASIC1.88□□□□□ -2.11
LHX3Q9UBR4 AL357078.3-201ENST00000607528 618 ntBASIC1.88□□□□□ -2.11
LHX3Q9UBR4 AL359314.1-201ENST00000616913 261 ntBASIC1.88□□□□□ -2.11
LHX3Q9UBR4 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.88□□□□□ -2.11
LHX3Q9UBR4 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.88□□□□□ -2.11
LHX3Q9UBR4 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
LHX3Q9UBR4 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
LHX3Q9UBR4 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.87□□□□□ -2.11
LHX3Q9UBR4 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
LHX3Q9UBR4 MIR583-201ENST00000384846 75 ntBASIC1.87□□□□□ -2.11
LHX3Q9UBR4 MIR17-201ENST00000385012 84 ntBASIC1.87□□□□□ -2.11
LHX3Q9UBR4 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
LHX3Q9UBR4 SNORA40.18-201ENST00000391200 128 ntBASIC1.87□□□□□ -2.11
LHX3Q9UBR4 MIR1262-201ENST00000408276 93 ntBASIC1.87□□□□□ -2.11
LHX3Q9UBR4 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.87□□□□□ -2.11
LHX3Q9UBR4 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.87□□□□□ -2.11
LHX3Q9UBR4 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.87□□□□□ -2.11
LHX3Q9UBR4 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC1.87□□□□□ -2.11
LHX3Q9UBR4 RNU6-1037P-201ENST00000459571 107 ntBASIC1.87□□□□□ -2.11
LHX3Q9UBR4 RNU6-1208P-201ENST00000459588 107 ntBASIC1.87□□□□□ -2.11
LHX3Q9UBR4 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.87□□□□□ -2.11
LHX3Q9UBR4 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.87□□□□□ -2.11
LHX3Q9UBR4 AC104576.1-201ENST00000524225 88 ntBASIC1.87□□□□□ -2.11
LHX3Q9UBR4 AP005597.4-201ENST00000526762 229 ntBASIC1.87□□□□□ -2.11
LHX3Q9UBR4 MIR3923-201ENST00000579521 83 ntBASIC1.87□□□□□ -2.11
LHX3Q9UBR4 AL162413.1-201ENST00000603198 110 ntBASIC1.87□□□□□ -2.11
LHX3Q9UBR4 MIR1248-201ENST00000629190 106 ntBASIC1.87□□□□□ -2.11
LHX3Q9UBR4 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.87□□□□□ -2.11
LHX3Q9UBR4 OR4G1P-203ENST00000641984 1631 ntBASIC1.87□□□□□ -2.11
LHX3Q9UBR4 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
LHX3Q9UBR4 MTND4P1-201ENST00000457501 1466 ntBASIC1.87□□□□□ -2.11
LHX3Q9UBR4 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.86□□□□□ -2.11
LHX3Q9UBR4 Y_RNA.38-201ENST00000362617 102 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 RNU6-1090P-201ENST00000364065 94 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
LHX3Q9UBR4 SNORD14D-201ENST00000384390 87 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 MIR514A2-201ENST00000385131 88 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 MIR514A3-201ENST00000385132 88 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 SNORA12-201ENST00000391162 147 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 RNA5SP450-201ENST00000411206 102 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 AP000275.1-201ENST00000411943 390 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 SEPT14P3-201ENST00000439401 183 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.86□□□□□ -2.11
LHX3Q9UBR4 GPM6BP3-201ENST00000442797 145 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 AL732372.2-207ENST00000445840 183 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 SEPT14P2-201ENST00000453405 183 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 AC132942.1-201ENST00000486753 483 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 AC083904.1-201ENST00000487828 231 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 AC116337.1-201ENST00000509680 687 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 AC091874.1-201ENST00000511402 339 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 SEPT14P4-201ENST00000513445 186 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 SNORA19.2-201ENST00000516013 114 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 RNU6-295P-201ENST00000516901 104 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 FO082796.1-201ENST00000523795 183 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 AC016957.1-201ENST00000534895 309 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.86□□□□□ -2.11
LHX3Q9UBR4 MIR5692C1-201ENST00000585309 91 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 AC010525.2-201ENST00000590920 195 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 AP000654.2-201ENST00000605633 586 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 RNU6-89P-201ENST00000606519 100 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 AC064836.2-201ENST00000609491 462 ntBASIC1.86□□□□□ -2.11
LHX3Q9UBR4 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
LHX3Q9UBR4 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
LHX3Q9UBR4 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.86□□□□□ -2.11
LHX3Q9UBR4 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.86□□□□□ -2.11
LHX3Q9UBR4 ZNF702P-202ENST00000434269 1966 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 Y_RNA.3-201ENST00000362331 103 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 Y_RNA.167-201ENST00000363735 109 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 Y_RNA.231-201ENST00000364358 102 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 SNORD32B-201ENST00000364460 84 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 RNU4-52P-201ENST00000384209 138 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 SNORA51.11-201ENST00000384442 131 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 Y_RNA.504-201ENST00000384481 104 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 SNORD116-4-201ENST00000384733 96 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 SNORA46.1-201ENST00000391069 153 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 SNORA26.3-201ENST00000391119 136 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 AL512604.1-201ENST00000404812 257 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 MTCYBP2-201ENST00000407745 171 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.85□□□□□ -2.11
LHX3Q9UBR4 AC096920.1-201ENST00000423991 241 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms