Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 AC080013.2-201ENST00000460866 323 ntBASIC3.14□□□□□ -1.91
MKS1Q9NXB0 AP000870.1-201ENST00000472927 406 ntBASIC3.14□□□□□ -1.91
MKS1Q9NXB0 AC145146.1-201ENST00000496370 254 ntBASIC3.14□□□□□ -1.91
MKS1Q9NXB0 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.14□□□□□ -1.91
MKS1Q9NXB0 SNORA40.14-201ENST00000516543 86 ntBASIC3.14□□□□□ -1.91
MKS1Q9NXB0 RNU6-1198P-201ENST00000516904 67 ntBASIC3.14□□□□□ -1.91
MKS1Q9NXB0 RNU1-45P-201ENST00000517191 141 ntBASIC3.14□□□□□ -1.91
MKS1Q9NXB0 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC3.14□□□□□ -1.91
MKS1Q9NXB0 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.14□□□□□ -1.91
MKS1Q9NXB0 AC006600.1-201ENST00000572529 153 ntBASIC3.14□□□□□ -1.91
MKS1Q9NXB0 AC090617.3-201ENST00000573670 475 ntBASIC3.14□□□□□ -1.91
MKS1Q9NXB0 PCGEM1.1-201ENST00000613431 131 ntBASIC3.14□□□□□ -1.91
MKS1Q9NXB0 AL121772.2-201ENST00000614331 297 ntBASIC3.14□□□□□ -1.91
MKS1Q9NXB0 AC034229.5-201ENST00000624258 185 ntBASIC3.14□□□□□ -1.91
MKS1Q9NXB0 AL035425.3-201ENST00000564206 4996 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
MKS1Q9NXB0 AC091812.1-201ENST00000432235 1948 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 RNU6-222P-201ENST00000362438 107 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 RNU6-137P-201ENST00000363680 108 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 AL359837.1-201ENST00000381357 287 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 Y_RNA.557-201ENST00000384680 107 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 U3.19-201ENST00000390893 196 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 UBA52P6-201ENST00000399822 382 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 RNA5SP344-201ENST00000411081 104 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 HMGB3P2-201ENST00000411913 584 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 AC114482.1-201ENST00000418010 247 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 USP9YP16-201ENST00000430287 407 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.13□□□□□ -1.91
MKS1Q9NXB0 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.13□□□□□ -1.91
MKS1Q9NXB0 USP9YP23-201ENST00000455085 407 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.13□□□□□ -1.91
MKS1Q9NXB0 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.13□□□□□ -1.91
MKS1Q9NXB0 AC023141.11-201ENST00000508864 202 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 RNU6-911P-201ENST00000516523 104 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 RNU6-58P-201ENST00000517143 103 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 HSBP1P1-201ENST00000555205 166 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.13□□□□□ -1.91
MKS1Q9NXB0 AL713866.2-201ENST00000603579 219 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 AL360085.1-201ENST00000604713 532 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 AL132822.1-201ENST00000617063 513 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 ZNF72P-201ENST00000425869 1908 ntBASIC3.13□□□□□ -1.91
MKS1Q9NXB0 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.12□□□□□ -1.91
MKS1Q9NXB0 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
MKS1Q9NXB0 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.12□□□□□ -1.91
MKS1Q9NXB0 RNU6-461P-201ENST00000364195 107 ntBASIC3.12□□□□□ -1.91
MKS1Q9NXB0 SNORA63C-201ENST00000364578 129 ntBASIC3.12□□□□□ -1.91
MKS1Q9NXB0 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
MKS1Q9NXB0 MIR134-201ENST00000385258 73 ntBASIC3.12□□□□□ -1.91
MKS1Q9NXB0 Y_RNA.645-201ENST00000391229 102 ntBASIC3.12□□□□□ -1.91
MKS1Q9NXB0 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
MKS1Q9NXB0 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.12□□□□□ -1.91
MKS1Q9NXB0 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.12□□□□□ -1.91
MKS1Q9NXB0 AC112492.4-201ENST00000456549 352 ntBASIC3.12□□□□□ -1.91
MKS1Q9NXB0 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.12□□□□□ -1.91
MKS1Q9NXB0 AC007215.1-201ENST00000464893 276 ntBASIC3.12□□□□□ -1.91
MKS1Q9NXB0 RN7SL542P-201ENST00000467147 294 ntBASIC3.12□□□□□ -1.91
MKS1Q9NXB0 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.12□□□□□ -1.91
MKS1Q9NXB0 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.12□□□□□ -1.91
MKS1Q9NXB0 RNU6-1137P-201ENST00000517073 99 ntBASIC3.12□□□□□ -1.91
MKS1Q9NXB0 MIR2355-201ENST00000517199 87 ntBASIC3.12□□□□□ -1.91
MKS1Q9NXB0 AC091144.1-201ENST00000519573 138 ntBASIC3.12□□□□□ -1.91
MKS1Q9NXB0 EIF4A1P12-201ENST00000551910 141 ntBASIC3.12□□□□□ -1.91
MKS1Q9NXB0 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.12□□□□□ -1.91
MKS1Q9NXB0 MIR4680-201ENST00000580906 66 ntBASIC3.12□□□□□ -1.91
MKS1Q9NXB0 MIR5188-201ENST00000583467 113 ntBASIC3.12□□□□□ -1.91
MKS1Q9NXB0 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.12□□□□□ -1.91
MKS1Q9NXB0 AL162713.1-201ENST00000604480 262 ntBASIC3.12□□□□□ -1.91
MKS1Q9NXB0 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
MKS1Q9NXB0 AC093908.1-201ENST00000623125 8092 ntBASIC3.12□□□□□ -1.91
MKS1Q9NXB0 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
MKS1Q9NXB0 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.11□□□□□ -1.91
MKS1Q9NXB0 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
MKS1Q9NXB0 RNA5SP124-201ENST00000362739 110 ntBASIC3.11□□□□□ -1.91
MKS1Q9NXB0 U3.9-201ENST00000363823 204 ntBASIC3.11□□□□□ -1.91
MKS1Q9NXB0 MIR29B2-201ENST00000385055 81 ntBASIC3.11□□□□□ -1.91
MKS1Q9NXB0 MIR628-201ENST00000385229 95 ntBASIC3.11□□□□□ -1.91
MKS1Q9NXB0 SNORA46.1-201ENST00000391069 153 ntBASIC3.11□□□□□ -1.91
MKS1Q9NXB0 RNU6-159P-201ENST00000391080 106 ntBASIC3.11□□□□□ -1.91
MKS1Q9NXB0 RNU1-139P-201ENST00000391307 165 ntBASIC3.11□□□□□ -1.91
MKS1Q9NXB0 BMS1P22-201ENST00000414726 313 ntBASIC3.11□□□□□ -1.91
MKS1Q9NXB0 AL590556.1-201ENST00000423231 483 ntBASIC3.11□□□□□ -1.91
MKS1Q9NXB0 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.11□□□□□ -1.91
MKS1Q9NXB0 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.11□□□□□ -1.91
MKS1Q9NXB0 AL133547.1-201ENST00000448546 220 ntBASIC3.11□□□□□ -1.91
MKS1Q9NXB0 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.11□□□□□ -1.91
MKS1Q9NXB0 U8.22-201ENST00000459141 133 ntBASIC3.11□□□□□ -1.91
MKS1Q9NXB0 RNU6-1114P-201ENST00000516022 107 ntBASIC3.11□□□□□ -1.91
MKS1Q9NXB0 RNA5SP54-201ENST00000516951 92 ntBASIC3.11□□□□□ -1.91
MKS1Q9NXB0 AC023632.4-201ENST00000517783 191 ntBASIC3.11□□□□□ -1.91
MKS1Q9NXB0 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.11□□□□□ -1.91
MKS1Q9NXB0 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.11□□□□□ -1.91
MKS1Q9NXB0 AC104695.3-201ENST00000604052 296 ntBASIC3.11□□□□□ -1.91
MKS1Q9NXB0 PART1_1.1-201ENST00000611761 217 ntBASIC3.11□□□□□ -1.91
MKS1Q9NXB0 AC090517.3-201ENST00000625170 141 ntBASIC3.11□□□□□ -1.91
MKS1Q9NXB0 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.11□□□□□ -1.91
MKS1Q9NXB0 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
MKS1Q9NXB0 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
MKS1Q9NXB0 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
MKS1Q9NXB0 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
MKS1Q9NXB0 SET-203ENST00000372688 801 ntTSL 2 BASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 10.6 ms