Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 POC1B-211ENST00000549504 581 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 MIR7106-201ENST00000612419 65 ntBASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 AL138880.2-201ENST00000616214 239 ntBASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 FAM35DP-201ENST00000323387 2712 ntBASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 Y_RNA.44-201ENST00000362676 108 ntBASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 Y_RNA.274-201ENST00000364714 101 ntBASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 RNU4-47P-201ENST00000410876 114 ntBASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 RNU4-61P-201ENST00000411243 107 ntBASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 RNU6-1001P-201ENST00000411265 100 ntBASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 AC245291.1-201ENST00000419501 328 ntBASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 NDUFB4P10-201ENST00000452541 359 ntBASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 snoU13.28-201ENST00000459235 104 ntBASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 RPL30P14-201ENST00000482744 348 ntBASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 IGHVII-62-1-201ENST00000519283 235 ntBASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 UBL5P4-201ENST00000562584 236 ntBASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 MIR3136-201ENST00000583498 78 ntBASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 RNU6-91P-201ENST00000607774 107 ntBASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC87Q9NVE4 MAPK10-373ENST00000641983 6772 ntBASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 Y_RNA.83-201ENST00000363005 113 ntBASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 RNU6-626P-201ENST00000363354 107 ntBASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 Y_RNA.569-201ENST00000384749 103 ntBASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 Y_RNA.595-201ENST00000410403 105 ntBASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 CYCSP48-201ENST00000417124 323 ntBASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 AC025750.2-201ENST00000442609 450 ntBASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 AL441985.1-201ENST00000457727 251 ntBASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 AC006445.1-201ENST00000491925 405 ntBASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 RNU7-110P-201ENST00000516891 62 ntBASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 HMGN2P15-201ENST00000585707 270 ntBASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 AL162713.1-201ENST00000604480 262 ntBASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 TNPO1P3-201ENST00000436471 2662 ntBASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
CCDC87Q9NVE4 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 Y_RNA.270-201ENST00000364693 104 ntBASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 RNU4-56P-201ENST00000364700 142 ntBASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 SNORA36A-201ENST00000384221 132 ntBASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 Y_RNA.570-201ENST00000384750 101 ntBASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 AC112220.1-201ENST00000434628 355 ntBASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 COX6CP14-201ENST00000469580 174 ntBASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 AC107626.1-201ENST00000471084 183 ntBASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 AP002884.2-201ENST00000471647 395 ntBASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 RPL30P12-201ENST00000474666 353 ntBASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 AL356575.1-201ENST00000603008 283 ntBASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 AC006023.1-201ENST00000603944 259 ntBASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 AC010999.1-201ENST00000611856 324 ntBASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC87Q9NVE4 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 SNORA5B-201ENST00000363786 132 ntBASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 RNU6-748P-201ENST00000384648 107 ntBASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 PTGES3P4-201ENST00000426243 356 ntBASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 MTCO1P5-201ENST00000433573 344 ntBASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 AC104332.1-201ENST00000440471 797 ntBASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 AC007215.1-201ENST00000464893 276 ntBASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 AKIRIN2P1-201ENST00000505898 352 ntBASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 SNORA40.9-201ENST00000515895 93 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 133.3 ms