Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AL031281.1-201ENST00000604049 488 ntBASIC1.08□□□□□ -2.24
USP42Q9H9J4 AL139286.2-201ENST00000606838 396 ntBASIC1.08□□□□□ -2.24
USP42Q9H9J4 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC1.08□□□□□ -2.24
USP42Q9H9J4 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.07□□□□□ -2.24
USP42Q9H9J4 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
USP42Q9H9J4 RNA5SP327-201ENST00000362494 101 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 SNORD113-6-201ENST00000363345 75 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 Y_RNA.332-201ENST00000365271 113 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 MIR520A-201ENST00000384862 85 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 MIR513B-201ENST00000385136 84 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 SNORD115.1-201ENST00000391109 76 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 EEF1A1P40-201ENST00000412883 573 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 POLR2J4-204ENST00000418424 324 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 AC123900.1-201ENST00000420390 96 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 MRPL35P3-201ENST00000421557 364 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.07□□□□□ -2.24
USP42Q9H9J4 AL669831.1-202ENST00000428504 417 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 AC005534.2-201ENST00000431047 433 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 FTH1P12-201ENST00000432137 551 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 AC119618.1-201ENST00000434191 222 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 AC007969.2-201ENST00000441891 191 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 MTND5P2-201ENST00000442927 1142 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.07□□□□□ -2.24
USP42Q9H9J4 AC132479.1-201ENST00000449160 144 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 RNU1-131P-201ENST00000458943 161 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC1.07□□□□□ -2.24
USP42Q9H9J4 RNU5A-4P-201ENST00000516588 111 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 MTND4LP18-201ENST00000526864 291 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.07□□□□□ -2.24
USP42Q9H9J4 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC1.07□□□□□ -2.24
USP42Q9H9J4 AC109446.1-201ENST00000566172 220 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 AC091489.2-201ENST00000566263 604 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 MTCO2P2-201ENST00000591258 225 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 AC105129.3-201ENST00000605455 485 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 AC104073.3-201ENST00000610942 955 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 RMST_7.1-201ENST00000621935 268 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 AC095038.3-201ENST00000634439 195 ntBASIC1.07□□□□□ -2.24
USP42Q9H9J4 AL442644.1-201ENST00000454390 3105 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 Y_RNA.18-201ENST00000362461 102 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 RNU6-371P-201ENST00000364283 108 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 Y_RNA.374-201ENST00000365606 101 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 SNORA24.1-201ENST00000384401 135 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 RNU6-1222P-201ENST00000384615 107 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 MIR618-201ENST00000385287 98 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 RNU6-360P-201ENST00000390944 104 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 AL161935.2-201ENST00000414627 60 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 SSR1P2-201ENST00000415208 787 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC1.06□□□□□ -2.24
USP42Q9H9J4 AC027119.1-201ENST00000440877 241 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 AC092989.1-201ENST00000481235 277 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 RBBP4P6-201ENST00000508098 202 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 AC087854.1-201ENST00000519706 414 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 AC115990.1-201ENST00000526957 301 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 AC087883.1-201ENST00000551882 391 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.06□□□□□ -2.24
USP42Q9H9J4 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC1.06□□□□□ -2.24
USP42Q9H9J4 MIR5692A1-201ENST00000580523 69 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 AL590229.1-201ENST00000603497 542 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 AL391834.2-201ENST00000609982 546 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 AC131159.1-201ENST00000621854 213 ntBASIC1.06□□□□□ -2.24
USP42Q9H9J4 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
USP42Q9H9J4 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
USP42Q9H9J4 RNU4-15P-201ENST00000362613 141 ntBASIC1.05□□□□□ -2.24
USP42Q9H9J4 SNORD33-201ENST00000362761 85 ntBASIC1.05□□□□□ -2.24
USP42Q9H9J4 RNU6-533P-201ENST00000384144 107 ntBASIC1.05□□□□□ -2.24
USP42Q9H9J4 MIR625-201ENST00000385047 85 ntBASIC1.05□□□□□ -2.24
USP42Q9H9J4 MTCYBP36-201ENST00000404146 440 ntBASIC1.05□□□□□ -2.24
USP42Q9H9J4 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.05□□□□□ -2.24
USP42Q9H9J4 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.05□□□□□ -2.24
USP42Q9H9J4 HSPE1P13-201ENST00000451143 297 ntBASIC1.05□□□□□ -2.24
USP42Q9H9J4 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.05□□□□□ -2.24
USP42Q9H9J4 snoU13.30-201ENST00000458951 104 ntBASIC1.05□□□□□ -2.24
USP42Q9H9J4 AL163195.1-201ENST00000496941 348 ntBASIC1.05□□□□□ -2.24
USP42Q9H9J4 AL133373.1-201ENST00000497098 94 ntBASIC1.05□□□□□ -2.24
USP42Q9H9J4 AC010587.1-201ENST00000505809 469 ntBASIC1.05□□□□□ -2.24
USP42Q9H9J4 MTND2P7-201ENST00000521337 640 ntBASIC1.05□□□□□ -2.24
USP42Q9H9J4 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.05□□□□□ -2.24
USP42Q9H9J4 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.05□□□□□ -2.24
USP42Q9H9J4 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC1.05□□□□□ -2.24
USP42Q9H9J4 AC090888.2-201ENST00000559765 1144 ntBASIC1.05□□□□□ -2.24
USP42Q9H9J4 CYP3A52P-201ENST00000563326 91 ntBASIC1.05□□□□□ -2.24
USP42Q9H9J4 AC110760.3-201ENST00000598794 467 ntBASIC1.05□□□□□ -2.24
USP42Q9H9J4 AP000811.1-201ENST00000603803 651 ntBASIC1.05□□□□□ -2.24
USP42Q9H9J4 AL034555.1-201ENST00000604816 211 ntBASIC1.05□□□□□ -2.24
USP42Q9H9J4 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC1.05□□□□□ -2.24
USP42Q9H9J4 MIR6513-201ENST00000621188 64 ntBASIC1.05□□□□□ -2.24
USP42Q9H9J4 Y_RNA.22-201ENST00000362492 102 ntBASIC1.04□□□□□ -2.24
USP42Q9H9J4 SNORD32B-201ENST00000364460 84 ntBASIC1.04□□□□□ -2.24
USP42Q9H9J4 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
USP42Q9H9J4 RNU6-641P-201ENST00000384006 107 ntBASIC1.04□□□□□ -2.24
USP42Q9H9J4 RNU6-331P-201ENST00000384724 107 ntBASIC1.04□□□□□ -2.24
USP42Q9H9J4 MIR548B-201ENST00000385247 97 ntBASIC1.04□□□□□ -2.24
USP42Q9H9J4 RPL37P10-201ENST00000412884 288 ntBASIC1.04□□□□□ -2.24
USP42Q9H9J4 AL354692.1-201ENST00000423044 315 ntBASIC1.04□□□□□ -2.24
USP42Q9H9J4 AC000111.3-201ENST00000433478 193 ntBASIC1.04□□□□□ -2.24
USP42Q9H9J4 OR2A41P-201ENST00000473586 105 ntBASIC1.04□□□□□ -2.24
USP42Q9H9J4 RPL30P7-201ENST00000479312 323 ntBASIC1.04□□□□□ -2.24
USP42Q9H9J4 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC1.04□□□□□ -2.24
USP42Q9H9J4 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.04□□□□□ -2.24
USP42Q9H9J4 MTND1P8-201ENST00000571424 950 ntBASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms