Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 AL034555.1-201ENST00000604816 211 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.19□□□□□ -1.9
NUP88Q99567 AL159153.1-201ENST00000619688 317 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
NUP88Q99567 SNORA43.4-201ENST00000629559 138 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 AC092435.3-201ENST00000565538 3654 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
NUP88Q99567 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NUP88Q99567 AC138915.1-201ENST00000565427 1685 ntBASIC3.18□□□□□ -1.9
NUP88Q99567 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NUP88Q99567 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NUP88Q99567 snoU2_19.1-201ENST00000362361 80 ntBASIC3.18□□□□□ -1.9
NUP88Q99567 RNA5SP126-201ENST00000365092 109 ntBASIC3.18□□□□□ -1.9
NUP88Q99567 RNU6-1040P-201ENST00000383974 107 ntBASIC3.18□□□□□ -1.9
NUP88Q99567 SNORA29-201ENST00000384183 140 ntBASIC3.18□□□□□ -1.9
NUP88Q99567 RNU6-700P-201ENST00000391043 107 ntBASIC3.18□□□□□ -1.9
NUP88Q99567 RNA5SP21-201ENST00000410917 96 ntBASIC3.18□□□□□ -1.9
NUP88Q99567 RNA5SP344-201ENST00000411081 104 ntBASIC3.18□□□□□ -1.9
NUP88Q99567 AF228730.4-201ENST00000421457 183 ntBASIC3.18□□□□□ -1.9
NUP88Q99567 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.18□□□□□ -1.9
NUP88Q99567 AC008267.5-201ENST00000424928 265 ntBASIC3.18□□□□□ -1.9
NUP88Q99567 AC011816.1-201ENST00000441346 546 ntBASIC3.18□□□□□ -1.9
NUP88Q99567 RNU6-470P-201ENST00000515954 104 ntBASIC3.18□□□□□ -1.9
NUP88Q99567 RNU6-120P-201ENST00000516077 103 ntBASIC3.18□□□□□ -1.9
NUP88Q99567 RNU6-567P-201ENST00000516746 107 ntBASIC3.18□□□□□ -1.9
NUP88Q99567 AC105245.1-201ENST00000581934 244 ntBASIC3.18□□□□□ -1.9
NUP88Q99567 AC069294.1-201ENST00000608397 350 ntBASIC3.18□□□□□ -1.9
NUP88Q99567 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
NUP88Q99567 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
NUP88Q99567 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.18□□□□□ -1.9
NUP88Q99567 AC026241.1-201ENST00000517873 2142 ntBASIC3.17□□□□□ -1.9
NUP88Q99567 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
NUP88Q99567 MIR369-201ENST00000362155 70 ntBASIC3.17□□□□□ -1.9
NUP88Q99567 RNU6-859P-201ENST00000362728 107 ntBASIC3.17□□□□□ -1.9
NUP88Q99567 SNORA41-201ENST00000384675 132 ntBASIC3.17□□□□□ -1.9
NUP88Q99567 MTND1P14-201ENST00000427400 950 ntBASIC3.17□□□□□ -1.9
NUP88Q99567 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC3.17□□□□□ -1.9
NUP88Q99567 AC112220.1-201ENST00000434628 355 ntBASIC3.17□□□□□ -1.9
NUP88Q99567 RPS15AP7-201ENST00000439294 405 ntBASIC3.17□□□□□ -1.9
NUP88Q99567 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.17□□□□□ -1.9
NUP88Q99567 RNU7-152P-201ENST00000458982 64 ntBASIC3.17□□□□□ -1.9
NUP88Q99567 snoU13.14-201ENST00000459372 104 ntBASIC3.17□□□□□ -1.9
NUP88Q99567 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.17□□□□□ -1.9
NUP88Q99567 RPL17P19-201ENST00000489069 552 ntBASIC3.17□□□□□ -1.9
NUP88Q99567 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.17□□□□□ -1.9
NUP88Q99567 HMGB1P35-201ENST00000503360 598 ntBASIC3.17□□□□□ -1.9
NUP88Q99567 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.17□□□□□ -1.9
NUP88Q99567 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC3.17□□□□□ -1.9
NUP88Q99567 Y_RNA.661-201ENST00000516003 99 ntBASIC3.17□□□□□ -1.9
NUP88Q99567 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.17□□□□□ -1.9
NUP88Q99567 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC3.17□□□□□ -1.9
NUP88Q99567 AL590705.4-201ENST00000532209 134 ntBASIC3.17□□□□□ -1.9
NUP88Q99567 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
NUP88Q99567 CYP2C61P-201ENST00000604072 290 ntBASIC3.17□□□□□ -1.9
NUP88Q99567 AC005014.2-201ENST00000607795 599 ntBASIC3.17□□□□□ -1.9
NUP88Q99567 AC090115.4-201ENST00000609970 188 ntBASIC3.17□□□□□ -1.9
NUP88Q99567 AC107871.2-201ENST00000612894 502 ntBASIC3.17□□□□□ -1.9
NUP88Q99567 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.17□□□□□ -1.9
NUP88Q99567 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
NUP88Q99567 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
NUP88Q99567 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
NUP88Q99567 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
NUP88Q99567 RNU4-82P-201ENST00000362443 140 ntBASIC3.16□□□□□ -1.9
NUP88Q99567 RNU4-9P-201ENST00000364951 139 ntBASIC3.16□□□□□ -1.9
NUP88Q99567 AC243428.1-201ENST00000421099 264 ntBASIC3.16□□□□□ -1.9
NUP88Q99567 Z96811.1-201ENST00000445880 108 ntBASIC3.16□□□□□ -1.9
NUP88Q99567 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.16□□□□□ -1.9
NUP88Q99567 snoU13.6-201ENST00000458785 104 ntBASIC3.16□□□□□ -1.9
NUP88Q99567 RN7SKP210-201ENST00000459176 261 ntBASIC3.16□□□□□ -1.9
NUP88Q99567 AC087477.1-201ENST00000465747 340 ntBASIC3.16□□□□□ -1.9
NUP88Q99567 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.16□□□□□ -1.9
NUP88Q99567 AC016256.1-201ENST00000547971 354 ntBASIC3.16□□□□□ -1.9
NUP88Q99567 MIR5696-201ENST00000578474 85 ntBASIC3.16□□□□□ -1.9
NUP88Q99567 Z98751.3-201ENST00000604447 521 ntBASIC3.16□□□□□ -1.9
NUP88Q99567 AC093010.3-201ENST00000570269 15214 ntBASIC3.16□□□□□ -1.9
NUP88Q99567 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
NUP88Q99567 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.15□□□□□ -1.9
NUP88Q99567 MTND4P27-201ENST00000450813 1354 ntBASIC3.15□□□□□ -1.9
NUP88Q99567 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
NUP88Q99567 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
NUP88Q99567 RNU6-595P-201ENST00000363944 107 ntBASIC3.15□□□□□ -1.91
NUP88Q99567 MIR9-1-201ENST00000385198 89 ntBASIC3.15□□□□□ -1.91
NUP88Q99567 AL590004.2-201ENST00000404787 371 ntBASIC3.15□□□□□ -1.91
NUP88Q99567 AL358453.1-201ENST00000422522 250 ntBASIC3.15□□□□□ -1.91
NUP88Q99567 AIMP1P2-201ENST00000425294 312 ntBASIC3.15□□□□□ -1.91
NUP88Q99567 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.15□□□□□ -1.91
NUP88Q99567 AC092423.1-201ENST00000430165 186 ntBASIC3.15□□□□□ -1.91
NUP88Q99567 RPL23AP75-201ENST00000491601 451 ntBASIC3.15□□□□□ -1.91
NUP88Q99567 RNU7-175P-201ENST00000515915 61 ntBASIC3.15□□□□□ -1.91
NUP88Q99567 MIR3117-201ENST00000584034 78 ntBASIC3.15□□□□□ -1.91
NUP88Q99567 IGHVIII-44-202ENST00000636235 289 ntBASIC3.15□□□□□ -1.91
NUP88Q99567 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
NUP88Q99567 MAPK10-266ENST00000641066 6555 ntBASIC3.15□□□□□ -1.91
NUP88Q99567 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
NUP88Q99567 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
NUP88Q99567 AL355596.1-201ENST00000565399 3996 ntBASIC3.14□□□□□ -1.91
NUP88Q99567 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.14□□□□□ -1.91
NUP88Q99567 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
NUP88Q99567 RNU6-1159P-201ENST00000362933 107 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms