Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 RNU6-661P-201ENST00000362409 107 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 RNU6-1120P-201ENST00000362988 108 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 RPS29P13-201ENST00000402041 169 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 RNU4-62P-201ENST00000410125 130 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 AP1B1P2-201ENST00000416196 106 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 MTATP6P18-201ENST00000417994 673 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 RPL31P63-201ENST00000422565 375 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 AC092447.3-201ENST00000426027 686 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 MTND4P32-201ENST00000437189 1237 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 AC132479.1-201ENST00000449160 144 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 AL356010.1-201ENST00000456364 102 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 RPS29P11-201ENST00000496507 171 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 AC016632.1-201ENST00000503994 196 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 AC010493.1-201ENST00000513479 292 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 AL137161.1-201ENST00000532231 390 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 AGGF1P4-201ENST00000568249 801 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 AC103810.8-201ENST00000607347 118 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 AP000770.2-201ENST00000623694 100 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 AC120349.3-201ENST00000624377 529 ntBASIC1.82□□□□□ -2.12
HDDC3Q8N4P3 RNU6-552P-201ENST00000362869 119 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 Y_RNA.122-201ENST00000363331 96 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 SNORD32A-201ENST00000364805 84 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 RNU6-438P-201ENST00000365561 103 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 RNU6-517P-201ENST00000384362 110 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 MIR518E-201ENST00000385252 88 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 MTCYBP2-201ENST00000407745 171 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 MTCO3P41-201ENST00000414801 328 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 NCOR1P3-201ENST00000420479 303 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 SNAP23P1-201ENST00000433229 246 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 RNU7-63P-201ENST00000459054 62 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 RNU7-167P-201ENST00000459160 62 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 RNVU1-2-201ENST00000516326 135 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 MTCO2P4-201ENST00000517968 247 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 MIR3169-201ENST00000578032 83 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 AC012507.3-201ENST00000603556 477 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 RMST_6.1-201ENST00000611980 203 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 LINC02555-201ENST00000563933 1951 ntBASIC1.81□□□□□ -2.12
HDDC3Q8N4P3 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 SNORA16.1-201ENST00000364597 132 ntBASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 Y_RNA.399-201ENST00000383955 105 ntBASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 Y_RNA.504-201ENST00000384481 104 ntBASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 RNU6-1106P-201ENST00000390845 107 ntBASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 SUMO2P12-201ENST00000405924 140 ntBASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 RN7SL274P-201ENST00000492268 272 ntBASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 AC008834.1-201ENST00000511612 175 ntBASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 Y_RNA.695-201ENST00000516715 107 ntBASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 RNU6-567P-201ENST00000516746 107 ntBASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 RNU6-250P-201ENST00000516958 103 ntBASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 MTCO3P23-201ENST00000561363 289 ntBASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 RNU6-85P-201ENST00000605989 107 ntBASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 AL354685.2-201ENST00000448218 1447 ntBASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
HDDC3Q8N4P3 U3.9-201ENST00000363823 204 ntBASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 Y_RNA.332-201ENST00000365271 113 ntBASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 RNU6-903P-201ENST00000391270 109 ntBASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 AL030996.1-201ENST00000411430 235 ntBASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 RPL31P3-201ENST00000458430 332 ntBASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 HIF1AP1-201ENST00000553642 175 ntBASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 MIR3198-2-201ENST00000577868 80 ntBASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 MTATP6P3-201ENST00000581686 676 ntBASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 AC005786.1-201ENST00000588553 154 ntBASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 AL512598.1-201ENST00000610158 273 ntBASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
HDDC3Q8N4P3 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 Y_RNA.796-201ENST00000364268 102 ntBASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 SNORD114-6-201ENST00000364393 72 ntBASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 Y_RNA.799-201ENST00000364992 102 ntBASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 MIR30A-201ENST00000385092 71 ntBASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 AC123900.1-201ENST00000420390 96 ntBASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 AL133396.1-201ENST00000432048 687 ntBASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms