| CHCHD2P9 | Q5T1J5 | AC007671.2-201 | ENST00000637344 | 619 nt | BASIC | 0.87 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | BRCA1-202 | ENST00000354071 | 4497 nt | TSL 1 (best) BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-37P-201 | ENST00000362692 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | SNORD113-6-201 | ENST00000363345 | 75 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-11P-201 | ENST00000364234 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-438P-201 | ENST00000365561 | 103 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-25P-201 | ENST00000383873 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-1-201 | ENST00000383898 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-48P-201 | ENST00000384161 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-36P-201 | ENST00000384172 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-4P-201 | ENST00000384205 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-5P-201 | ENST00000384238 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-43P-201 | ENST00000384302 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-3P-201 | ENST00000384314 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-16P-201 | ENST00000384385 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-692P-201 | ENST00000384496 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-15P-201 | ENST00000384534 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-2-201 | ENST00000384627 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-29P-201 | ENST00000384637 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-9-201 | ENST00000384776 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-33P-201 | ENST00000384793 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AL354692.1-201 | ENST00000423044 | 315 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AL512286.1-201 | ENST00000439244 | 400 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AL591501.1-201 | ENST00000439992 | 495 nt | TSL 5 BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | TRAPPC2P8-201 | ENST00000440676 | 396 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | TRAPPC2P3-201 | ENST00000443200 | 321 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AL136987.2-201 | ENST00000457321 | 684 nt | TSL 3 BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | SNRPFP3-201 | ENST00000457792 | 225 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RPL9P9-202 | ENST00000466501 | 579 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | OR2A41P-201 | ENST00000473586 | 105 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC117394.2-201 | ENST00000487827 | 323 nt | TSL 3 BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC116562.3-201 | ENST00000506136 | 177 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | LINC02465-202 | ENST00000508724 | 503 nt | TSL 3 BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | KRTAP13-6P-201 | ENST00000508999 | 371 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RPS3A-208 | ENST00000509736 | 576 nt | TSL 2 BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | MTCO3P28-201 | ENST00000513351 | 515 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | SNORA3.4-201 | ENST00000515969 | 96 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | SCARNA24.1-201 | ENST00000516465 | 137 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC019176.1-201 | ENST00000518519 | 225 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC068587.5-201 | ENST00000528506 | 175 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AP003097.2-201 | ENST00000530126 | 178 nt | TSL 3 BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | CCDC7-208 | ENST00000537047 | 657 nt | APPRIS ALT2 TSL 1 (best) BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC007631.1-201 | ENST00000578545 | 189 nt | TSL 3 BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC012507.3-201 | ENST00000603556 | 477 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC090578.1-201 | ENST00000604955 | 591 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-6P-201 | ENST00000606623 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AL451064.1-201 | ENST00000607718 | 471 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | TUSC7.1-201 | ENST00000610969 | 165 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | C8orf59-207 | ENST00000611854 | 563 nt | APPRIS P1 TSL 2 BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | MIR7111-201 | ENST00000619751 | 72 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC095038.3-201 | ENST00000634439 | 195 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC006927.3-201 | ENST00000638789 | 384 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC106754.1-201 | ENST00000562632 | 1513 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | Y_RNA.118-201 | ENST00000363300 | 101 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNY1P12-201 | ENST00000364251 | 105 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-42P-201 | ENST00000384165 | 107 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-45P-201 | ENST00000384471 | 107 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | MIR520A-201 | ENST00000384862 | 85 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | MIR548B-201 | ENST00000385247 | 97 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-360P-201 | ENST00000390944 | 104 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | SNORA12.2-201 | ENST00000391040 | 156 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU11-5P-201 | ENST00000391216 | 129 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RPL23AP32-201 | ENST00000395315 | 459 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC106883.1-201 | ENST00000418805 | 562 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC098592.1-201 | ENST00000419352 | 333 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AL590135.1-201 | ENST00000422215 | 156 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC019205.3-201 | ENST00000424573 | 156 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | LINC01675-201 | ENST00000426519 | 701 nt | TSL 3 BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC010975.2-201 | ENST00000427781 | 588 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | C8orf59P1-201 | ENST00000429930 | 303 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | INTS6L-AS1-201 | ENST00000430820 | 398 nt | TSL 3 BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | LINC00844-201 | ENST00000432535 | 477 nt | TSL 2 BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | PCDH9-AS3-201 | ENST00000434073 | 479 nt | TSL 2 BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC244670.1-201 | ENST00000436879 | 112 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | UPP2-IT1-201 | ENST00000439185 | 357 nt | TSL 3 BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC027119.1-201 | ENST00000440877 | 241 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC016700.2-201 | ENST00000446011 | 156 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC131571.1-202 | ENST00000454509 | 598 nt | TSL 4 BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC015911.1-201 | ENST00000495111 | 156 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC079140.2-201 | ENST00000506193 | 142 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC108078.1-201 | ENST00000508073 | 725 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-377P-201 | ENST00000515965 | 102 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | Y_RNA.672-201 | ENST00000516289 | 104 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNA5SP437-201 | ENST00000517249 | 129 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | CBX3P8-201 | ENST00000532412 | 525 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC016957.1-201 | ENST00000534895 | 309 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RPL21P5-201 | ENST00000554662 | 472 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC012414.6-201 | ENST00000568241 | 401 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC016727.2-201 | ENST00000603988 | 621 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AL391834.2-201 | ENST00000609982 | 546 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AL078604.3-201 | ENST00000615580 | 211 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | AC099654.13-201 | ENST00000639774 | 207 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | VPS13A-206 | ENST00000376646 | 2262 nt | TSL 5 BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | KIAA1551-201 | ENST00000312561 | 6230 nt | APPRIS P1 TSL 1 (best) BASIC | 0.85 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU5F-7P-201 | ENST00000363696 | 115 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | RNU6-1141P-201 | ENST00000364520 | 107 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | Y_RNA.324-201 | ENST00000365165 | 102 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | SNORD115-7-201 | ENST00000365306 | 82 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | SNORA20.2-201 | ENST00000383922 | 131 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| CHCHD2P9 | Q5T1J5 | SNORA32.2-201 | ENST00000384049 | 122 nt | BASIC | 0.84 | □□□□□ -2.27 | | |