Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC021146.2-201ENST00000504736 556 ntBASIC2.04□□□□□ -2.08
CDX1P47902 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.04□□□□□ -2.08
CDX1P47902 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.04□□□□□ -2.08
CDX1P47902 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.04□□□□□ -2.08
CDX1P47902 MIR4635-201ENST00000583759 79 ntBASIC2.04□□□□□ -2.08
CDX1P47902 AC023043.2-201ENST00000589678 1026 ntBASIC2.04□□□□□ -2.08
CDX1P47902 MIR3976-201ENST00000606807 139 ntBASIC2.04□□□□□ -2.08
CDX1P47902 MIR8076-201ENST00000611401 83 ntBASIC2.04□□□□□ -2.08
CDX1P47902 AL136221.1-201ENST00000621449 509 ntBASIC2.04□□□□□ -2.08
CDX1P47902 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC2.04□□□□□ -2.08
CDX1P47902 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.04□□□□□ -2.08
CDX1P47902 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.04□□□□□ -2.08
CDX1P47902 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.03□□□□□ -2.08
CDX1P47902 ZNF720P1-201ENST00000562403 1939 ntBASIC2.03□□□□□ -2.08
CDX1P47902 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.03□□□□□ -2.08
CDX1P47902 RNA5SP68-201ENST00000363885 119 ntBASIC2.03□□□□□ -2.08
CDX1P47902 RNU6-1013P-201ENST00000384180 107 ntBASIC2.03□□□□□ -2.08
CDX1P47902 RNU6-301P-201ENST00000384277 107 ntBASIC2.03□□□□□ -2.08
CDX1P47902 RNU6-378P-201ENST00000384324 107 ntBASIC2.03□□□□□ -2.08
CDX1P47902 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.03□□□□□ -2.08
CDX1P47902 AL590632.1-201ENST00000424289 371 ntBASIC2.03□□□□□ -2.08
CDX1P47902 MTND4LP16-201ENST00000440828 295 ntBASIC2.03□□□□□ -2.08
CDX1P47902 AL353572.1-201ENST00000442490 417 ntBASIC2.03□□□□□ -2.08
CDX1P47902 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.03□□□□□ -2.08
CDX1P47902 RPS29P25-201ENST00000481709 171 ntBASIC2.03□□□□□ -2.08
CDX1P47902 AC132942.1-201ENST00000486753 483 ntBASIC2.03□□□□□ -2.08
CDX1P47902 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.03□□□□□ -2.08
CDX1P47902 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.03□□□□□ -2.08
CDX1P47902 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.03□□□□□ -2.08
CDX1P47902 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.03□□□□□ -2.08
CDX1P47902 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.03□□□□□ -2.08
CDX1P47902 MIR4529-201ENST00000578110 78 ntBASIC2.03□□□□□ -2.08
CDX1P47902 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.03□□□□□ -2.08
CDX1P47902 MIR5092-201ENST00000583139 88 ntBASIC2.03□□□□□ -2.08
CDX1P47902 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
CDX1P47902 MIR6840-201ENST00000611937 71 ntBASIC2.03□□□□□ -2.08
CDX1P47902 U6atac.1-201ENST00000616025 117 ntBASIC2.03□□□□□ -2.08
CDX1P47902 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.08
CDX1P47902 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.03□□□□□ -2.09
CDX1P47902 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
CDX1P47902 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.02□□□□□ -2.09
CDX1P47902 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
CDX1P47902 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CDX1P47902 SNORD62.1-201ENST00000362541 86 ntBASIC2.02□□□□□ -2.09
CDX1P47902 Y_RNA.212-201ENST00000364177 102 ntBASIC2.02□□□□□ -2.09
CDX1P47902 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
CDX1P47902 SNORD116-11-201ENST00000383882 92 ntBASIC2.02□□□□□ -2.09
CDX1P47902 RNU6-95P-201ENST00000384697 107 ntBASIC2.02□□□□□ -2.09
CDX1P47902 SNORA40.19-201ENST00000390846 128 ntBASIC2.02□□□□□ -2.09
CDX1P47902 RNU6-1093P-201ENST00000391194 107 ntBASIC2.02□□□□□ -2.09
CDX1P47902 HMGN2P39-201ENST00000398005 273 ntBASIC2.02□□□□□ -2.09
CDX1P47902 RNA5SP201-201ENST00000410316 124 ntBASIC2.02□□□□□ -2.09
CDX1P47902 RNA5SP494-201ENST00000410653 129 ntBASIC2.02□□□□□ -2.09
CDX1P47902 SRIP3-201ENST00000413200 219 ntBASIC2.02□□□□□ -2.09
CDX1P47902 Z82205.1-201ENST00000428456 297 ntBASIC2.02□□□□□ -2.09
CDX1P47902 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.02□□□□□ -2.09
CDX1P47902 AC011816.1-201ENST00000441346 546 ntBASIC2.02□□□□□ -2.09
CDX1P47902 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.02□□□□□ -2.09
CDX1P47902 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.02□□□□□ -2.09
CDX1P47902 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.02□□□□□ -2.09
CDX1P47902 ANXA2P1-201ENST00000505539 926 ntBASIC2.02□□□□□ -2.09
CDX1P47902 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.02□□□□□ -2.09
CDX1P47902 AC093259.1-201ENST00000509755 300 ntBASIC2.02□□□□□ -2.09
CDX1P47902 AC010486.1-201ENST00000511793 424 ntBASIC2.02□□□□□ -2.09
CDX1P47902 PTP4A1P4-201ENST00000512479 322 ntBASIC2.02□□□□□ -2.09
CDX1P47902 RNU6-991P-201ENST00000516168 107 ntBASIC2.02□□□□□ -2.09
CDX1P47902 SNORA31.25-201ENST00000517242 134 ntBASIC2.02□□□□□ -2.09
CDX1P47902 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.02□□□□□ -2.09
CDX1P47902 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CDX1P47902 AC016256.1-201ENST00000547971 354 ntBASIC2.02□□□□□ -2.09
CDX1P47902 EIF4A1P12-201ENST00000551910 141 ntBASIC2.02□□□□□ -2.09
CDX1P47902 FGF7P1-201ENST00000582820 288 ntBASIC2.02□□□□□ -2.09
CDX1P47902 MIR3942-201ENST00000585264 109 ntBASIC2.02□□□□□ -2.09
CDX1P47902 AP003465.2-201ENST00000602571 373 ntBASIC2.02□□□□□ -2.09
CDX1P47902 AL133215.3-201ENST00000609801 448 ntBASIC2.02□□□□□ -2.09
CDX1P47902 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.02□□□□□ -2.09
CDX1P47902 MIR6817-201ENST00000615588 66 ntBASIC2.02□□□□□ -2.09
CDX1P47902 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.02□□□□□ -2.09
CDX1P47902 MIR203B-201ENST00000636080 86 ntBASIC2.02□□□□□ -2.09
CDX1P47902 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
CDX1P47902 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
CDX1P47902 RNU6-968P-201ENST00000384076 107 ntBASIC2.01□□□□□ -2.09
CDX1P47902 SNORA29-201ENST00000384183 140 ntBASIC2.01□□□□□ -2.09
CDX1P47902 RNU6-831P-201ENST00000384548 107 ntBASIC2.01□□□□□ -2.09
CDX1P47902 MIR27B-201ENST00000385129 97 ntBASIC2.01□□□□□ -2.09
CDX1P47902 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
CDX1P47902 AL357139.1-201ENST00000407792 426 ntBASIC2.01□□□□□ -2.09
CDX1P47902 MIR1262-201ENST00000408276 93 ntBASIC2.01□□□□□ -2.09
CDX1P47902 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.01□□□□□ -2.09
CDX1P47902 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.01□□□□□ -2.09
CDX1P47902 NFU1P2-201ENST00000448700 469 ntBASIC2.01□□□□□ -2.09
CDX1P47902 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.01□□□□□ -2.09
CDX1P47902 MTND1P11-201ENST00000456661 876 ntBASIC2.01□□□□□ -2.09
CDX1P47902 AC130509.1-201ENST00000464158 433 ntBASIC2.01□□□□□ -2.09
CDX1P47902 MTND4LP26-201ENST00000518144 282 ntBASIC2.01□□□□□ -2.09
CDX1P47902 AP000889.2-201ENST00000532684 490 ntBASIC2.01□□□□□ -2.09
CDX1P47902 MRPS36P4-201ENST00000534436 298 ntBASIC2.01□□□□□ -2.09
CDX1P47902 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.01□□□□□ -2.09
CDX1P47902 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.01□□□□□ -2.09
CDX1P47902 POLR3GP2-201ENST00000588366 668 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms