Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 MIR1248-201ENST00000629190 106 ntBASIC1.06□□□□□ -2.24
COL18A1P39060 RNU6-39P-201ENST00000384344 107 ntBASIC1.05□□□□□ -2.24
COL18A1P39060 RPL23AP32-201ENST00000395315 459 ntBASIC1.05□□□□□ -2.24
COL18A1P39060 AL357139.1-201ENST00000407792 426 ntBASIC1.05□□□□□ -2.24
COL18A1P39060 RNU6-955P-201ENST00000410497 104 ntBASIC1.05□□□□□ -2.24
COL18A1P39060 AC007283.2-201ENST00000424739 197 ntBASIC1.05□□□□□ -2.24
COL18A1P39060 SDAD1P3-201ENST00000427380 333 ntBASIC1.05□□□□□ -2.24
COL18A1P39060 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.05□□□□□ -2.24
COL18A1P39060 AL035666.1-201ENST00000446195 348 ntBASIC1.05□□□□□ -2.24
COL18A1P39060 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC1.05□□□□□ -2.24
COL18A1P39060 MTND2P14-201ENST00000482139 351 ntBASIC1.05□□□□□ -2.24
COL18A1P39060 AC022447.4-201ENST00000504053 364 ntBASIC1.05□□□□□ -2.24
COL18A1P39060 RBBP4P6-201ENST00000508098 202 ntBASIC1.05□□□□□ -2.24
COL18A1P39060 AC096745.1-201ENST00000509945 370 ntBASIC1.05□□□□□ -2.24
COL18A1P39060 AC074344.1-201ENST00000512823 224 ntBASIC1.05□□□□□ -2.24
COL18A1P39060 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC1.05□□□□□ -2.24
COL18A1P39060 AC022022.2-201ENST00000602989 360 ntBASIC1.05□□□□□ -2.24
COL18A1P39060 AC138749.5-201ENST00000611461 208 ntBASIC1.05□□□□□ -2.24
COL18A1P39060 MIR8074-201ENST00000615081 81 ntBASIC1.05□□□□□ -2.24
COL18A1P39060 AC116165.2-201ENST00000616705 206 ntBASIC1.05□□□□□ -2.24
COL18A1P39060 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.05□□□□□ -2.24
COL18A1P39060 AC245060.5-201ENST00000610778 3293 ntBASIC1.05□□□□□ -2.24
COL18A1P39060 RNA5SP493-201ENST00000364115 91 ntBASIC1.04□□□□□ -2.24
COL18A1P39060 MIR597-201ENST00000384968 97 ntBASIC1.04□□□□□ -2.24
COL18A1P39060 Y_RNA.598-201ENST00000410480 95 ntBASIC1.04□□□□□ -2.24
COL18A1P39060 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
COL18A1P39060 AL358176.2-201ENST00000425769 204 ntBASIC1.04□□□□□ -2.24
COL18A1P39060 JTBP1-201ENST00000441314 247 ntBASIC1.04□□□□□ -2.24
COL18A1P39060 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.04□□□□□ -2.24
COL18A1P39060 MTND3P5-201ENST00000512798 333 ntBASIC1.04□□□□□ -2.24
COL18A1P39060 Y_RNA.672-201ENST00000516289 104 ntBASIC1.04□□□□□ -2.24
COL18A1P39060 MTND2P7-201ENST00000521337 640 ntBASIC1.04□□□□□ -2.24
COL18A1P39060 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.04□□□□□ -2.24
COL18A1P39060 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC1.04□□□□□ -2.24
COL18A1P39060 AC005771.1-201ENST00000585581 349 ntBASIC1.04□□□□□ -2.24
COL18A1P39060 AC018889.1-201ENST00000605372 397 ntBASIC1.04□□□□□ -2.24
COL18A1P39060 PRR13P7-201ENST00000605538 430 ntBASIC1.04□□□□□ -2.24
COL18A1P39060 AC104010.1-201ENST00000616889 150 ntBASIC1.04□□□□□ -2.24
COL18A1P39060 AC091304.6-201ENST00000619761 202 ntBASIC1.04□□□□□ -2.24
COL18A1P39060 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
COL18A1P39060 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
COL18A1P39060 RNU6-179P-201ENST00000363350 107 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 RNU5F-7P-201ENST00000363696 115 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 SNORD114-2-201ENST00000363953 78 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 RNA5SP193-201ENST00000410353 107 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 RNU6-607P-201ENST00000411283 108 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 AL031779.1-201ENST00000415663 330 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC1.03□□□□□ -2.24
COL18A1P39060 AL360271.2-201ENST00000447710 161 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 SNORD11.1-201ENST00000459482 85 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 RNU1-86P-201ENST00000516108 154 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 RNU1-107P-201ENST00000516617 154 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 AP001893.2-201ENST00000526949 202 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC1.03□□□□□ -2.24
COL18A1P39060 AP002453.2-201ENST00000533503 320 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.03□□□□□ -2.24
COL18A1P39060 AC087883.1-201ENST00000551882 391 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.03□□□□□ -2.24
COL18A1P39060 MIR4422-201ENST00000581938 83 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
COL18A1P39060 MIR8087-201ENST00000612745 78 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.03□□□□□ -2.24
COL18A1P39060 U4.7-201ENST00000638126 106 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 RNU6-500P-201ENST00000362349 107 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 RNU6-1285P-201ENST00000363480 105 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 SNORA48.1-201ENST00000390879 135 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 RNA5SP100-201ENST00000410903 110 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 RNA5SP59-201ENST00000410922 110 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 AL356583.2-201ENST00000426536 280 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC1.03□□□□□ -2.24
COL18A1P39060 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC1.03□□□□□ -2.24
COL18A1P39060 AC104806.1-201ENST00000508720 308 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 MTND3P25-201ENST00000509243 135 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.03□□□□□ -2.24
COL18A1P39060 RNU6-377P-201ENST00000515965 102 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.03□□□□□ -2.24
COL18A1P39060 TMF1P1-201ENST00000576058 373 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 MIR4711-201ENST00000578274 70 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 AC091135.1-201ENST00000585943 307 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 AC016925.2-201ENST00000605108 242 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 MIR7844-201ENST00000616161 122 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.03□□□□□ -2.24
COL18A1P39060 MTND5P17-201ENST00000418405 1603 ntBASIC1.02□□□□□ -2.25
COL18A1P39060 SNORD114-6-201ENST00000364393 72 ntBASIC1.02□□□□□ -2.25
COL18A1P39060 RNU5E-5P-201ENST00000365379 116 ntBASIC1.02□□□□□ -2.25
COL18A1P39060 RNU6-26P-201ENST00000383985 107 ntBASIC1.02□□□□□ -2.25
COL18A1P39060 RNU6-142P-201ENST00000384019 107 ntBASIC1.02□□□□□ -2.25
COL18A1P39060 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.02□□□□□ -2.25
COL18A1P39060 RNU2-41P-201ENST00000410991 178 ntBASIC1.02□□□□□ -2.25
COL18A1P39060 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.02□□□□□ -2.25
COL18A1P39060 AC116562.3-201ENST00000506136 177 ntBASIC1.02□□□□□ -2.25
COL18A1P39060 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC1.02□□□□□ -2.25
COL18A1P39060 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.02□□□□□ -2.25
COL18A1P39060 AC068587.5-201ENST00000528506 175 ntBASIC1.02□□□□□ -2.25
COL18A1P39060 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.02□□□□□ -2.25
COL18A1P39060 AC005786.1-201ENST00000588553 154 ntBASIC1.02□□□□□ -2.25
COL18A1P39060 HMGN1P30-201ENST00000589286 268 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms