Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL8A1P27658 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
COL8A1P27658 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL8A1P27658 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
COL8A1P27658 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC3.89□□□□□ -1.79
COL8A1P27658 AC092435.4-201ENST00000623012 4159 ntBASIC3.89□□□□□ -1.79
COL8A1P27658 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL8A1P27658 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL8A1P27658 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC3.89□□□□□ -1.79
COL8A1P27658 OR51H2P-202ENST00000641424 3046 ntBASIC3.89□□□□□ -1.79
COL8A1P27658 Y_RNA.111-201ENST00000363248 100 ntBASIC3.89□□□□□ -1.79
COL8A1P27658 SNORA63.5-201ENST00000363548 123 ntBASIC3.89□□□□□ -1.79
COL8A1P27658 RNU6-674P-201ENST00000363831 107 ntBASIC3.89□□□□□ -1.79
COL8A1P27658 RNU6-1323P-201ENST00000384025 107 ntBASIC3.89□□□□□ -1.79
COL8A1P27658 RNU6-140P-201ENST00000384566 108 ntBASIC3.89□□□□□ -1.79
COL8A1P27658 RNU6-972P-201ENST00000391208 107 ntBASIC3.89□□□□□ -1.79
COL8A1P27658 AL590004.2-201ENST00000404787 371 ntBASIC3.89□□□□□ -1.79
COL8A1P27658 RNA5SP504-201ENST00000410676 117 ntBASIC3.89□□□□□ -1.79
COL8A1P27658 AL139281.1-201ENST00000422120 335 ntBASIC3.89□□□□□ -1.79
COL8A1P27658 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.89□□□□□ -1.79
COL8A1P27658 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.89□□□□□ -1.79
COL8A1P27658 AC010531.2-201ENST00000465012 153 ntBASIC3.89□□□□□ -1.79
COL8A1P27658 SNORA18.4-201ENST00000516440 124 ntBASIC3.89□□□□□ -1.79
COL8A1P27658 GNRHR2P1-201ENST00000555315 631 ntBASIC3.89□□□□□ -1.79
COL8A1P27658 AC027176.1-201ENST00000560204 514 ntBASIC3.89□□□□□ -1.79
COL8A1P27658 HSPE1P5-201ENST00000561489 272 ntBASIC3.89□□□□□ -1.79
COL8A1P27658 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.89□□□□□ -1.79
COL8A1P27658 LINC00901.1-201ENST00000617252 152 ntBASIC3.89□□□□□ -1.79
COL8A1P27658 SNORD98-201ENST00000636377 67 ntBASIC3.89□□□□□ -1.79
COL8A1P27658 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.89□□□□□ -1.79
COL8A1P27658 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
COL8A1P27658 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL8A1P27658 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
COL8A1P27658 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC3.89□□□□□ -1.79
COL8A1P27658 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.89□□□□□ -1.79
COL8A1P27658 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL8A1P27658 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL8A1P27658 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.88□□□□□ -1.79
COL8A1P27658 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
COL8A1P27658 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC3.88□□□□□ -1.79
COL8A1P27658 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
COL8A1P27658 Y_RNA.78-201ENST00000362970 110 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 RNU6-778P-201ENST00000363269 103 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 RNU4-41P-201ENST00000364426 143 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 RNU6-178P-201ENST00000384631 104 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 MIR624-201ENST00000385217 97 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 CBX3P9-201ENST00000402326 552 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 RNU2-70P-201ENST00000410718 179 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 RNU2-32P-201ENST00000411193 191 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 AC004866.1-201ENST00000411748 78 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 AC092047.1-201ENST00000424997 240 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 AF228730.3-201ENST00000436691 102 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 RPL37P4-201ENST00000448908 268 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.88□□□□□ -1.79
COL8A1P27658 RPL30P5-201ENST00000494923 336 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 RNU7-116P-201ENST00000516940 62 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 IGKV2D-19-201ENST00000523346 262 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 AC009163.5-201ENST00000575421 637 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 MIR3923-201ENST00000579521 83 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 AC090897.2-201ENST00000581715 130 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 POLR3GP1-201ENST00000594073 261 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 TCL6_2.1-201ENST00000615162 119 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 AC140479.6-201ENST00000633535 357 ntBASIC3.88□□□□□ -1.79
COL8A1P27658 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.88□□□□□ -1.79
COL8A1P27658 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL8A1P27658 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC3.87□□□□□ -1.79
COL8A1P27658 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
COL8A1P27658 AC004925.1-201ENST00000624256 2706 ntBASIC3.87□□□□□ -1.79
COL8A1P27658 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL8A1P27658 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL8A1P27658 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL8A1P27658 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.87□□□□□ -1.79
COL8A1P27658 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
COL8A1P27658 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.87□□□□□ -1.79
COL8A1P27658 RNA5SP235-201ENST00000365411 114 ntBASIC3.87□□□□□ -1.79
COL8A1P27658 RNA5SP127-201ENST00000411051 133 ntBASIC3.87□□□□□ -1.79
COL8A1P27658 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.87□□□□□ -1.79
COL8A1P27658 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.87□□□□□ -1.79
COL8A1P27658 PGBD4P5-201ENST00000445958 426 ntBASIC3.87□□□□□ -1.79
COL8A1P27658 AC012308.1-201ENST00000451232 178 ntBASIC3.87□□□□□ -1.79
COL8A1P27658 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.87□□□□□ -1.79
COL8A1P27658 AC107297.1-201ENST00000459991 176 ntBASIC3.87□□□□□ -1.79
COL8A1P27658 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.87□□□□□ -1.79
COL8A1P27658 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC3.87□□□□□ -1.79
COL8A1P27658 MIR5685-201ENST00000579080 79 ntBASIC3.87□□□□□ -1.79
COL8A1P27658 AL121772.2-201ENST00000614331 297 ntBASIC3.87□□□□□ -1.79
COL8A1P27658 uc_338.13-201ENST00000618243 179 ntBASIC3.87□□□□□ -1.79
COL8A1P27658 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.87□□□□□ -1.79
COL8A1P27658 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL8A1P27658 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL8A1P27658 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC3.87□□□□□ -1.79
COL8A1P27658 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC3.87□□□□□ -1.79
COL8A1P27658 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL8A1P27658 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.86□□□□□ -1.79
COL8A1P27658 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
COL8A1P27658 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC3.86□□□□□ -1.79
COL8A1P27658 RNA5SP119-201ENST00000362715 117 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 U3.8-201ENST00000363675 217 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 Y_RNA.634-201ENST00000364811 113 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 RNU6-487P-201ENST00000365430 104 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms