Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AL512633.1-201ENST00000399931 655 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 AL603908.1-201ENST00000406098 201 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 RPL23AP36-201ENST00000413895 458 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXA3O43365 AL365496.1-201ENST00000426885 215 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 SETP5-201ENST00000437270 562 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 AC007395.1-201ENST00000451333 677 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 PRELID3BP1-201ENST00000457142 540 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 U3.44-201ENST00000458938 192 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 AC106707.2-201ENST00000484182 374 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 AC026726.1-201ENST00000512859 601 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 AC018448.1-201ENST00000552843 316 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 AC055872.1-201ENST00000570978 278 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 KLKP1-201ENST00000595979 403 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 AL162713.1-201ENST00000604480 262 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 AC037487.3-201ENST00000606668 112 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 PCGEM1.1-201ENST00000613431 131 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 AC004792.1-201ENST00000614523 137 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 AC006001.4-201ENST00000622243 395 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXA3O43365 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA3O43365 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA3O43365 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.93
HOXA3O43365 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXA3O43365 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HOXA3O43365 AC099654.7-201ENST00000635788 2127 ntBASIC3.02□□□□□ -1.93
HOXA3O43365 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXA3O43365 OTUD4P1-201ENST00000237841 3067 ntBASIC3.02□□□□□ -1.93
HOXA3O43365 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
HOXA3O43365 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXA3O43365 RNU6-740P-201ENST00000364734 105 ntBASIC3.02□□□□□ -1.93
HOXA3O43365 RNA5SP51-201ENST00000364750 119 ntBASIC3.02□□□□□ -1.93
HOXA3O43365 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HOXA3O43365 Y_RNA.446-201ENST00000384178 104 ntBASIC3.02□□□□□ -1.93
HOXA3O43365 MIR218-2-201ENST00000385006 110 ntBASIC3.02□□□□□ -1.93
HOXA3O43365 MIR34B-201ENST00000385076 84 ntBASIC3.02□□□□□ -1.93
HOXA3O43365 Z98941.1-201ENST00000407764 100 ntBASIC3.02□□□□□ -1.93
HOXA3O43365 MIR1298-201ENST00000408783 112 ntBASIC3.02□□□□□ -1.93
HOXA3O43365 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXA3O43365 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXA3O43365 SUMO1P3-201ENST00000439961 304 ntBASIC3.02□□□□□ -1.93
HOXA3O43365 UQCRBP2-201ENST00000447827 297 ntBASIC3.02□□□□□ -1.93
HOXA3O43365 AP001324.2-201ENST00000461163 319 ntBASIC3.02□□□□□ -1.93
HOXA3O43365 AC091179.3-201ENST00000474761 144 ntBASIC3.02□□□□□ -1.93
HOXA3O43365 AC103975.1-201ENST00000482506 483 ntBASIC3.02□□□□□ -1.93
HOXA3O43365 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXA3O43365 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXA3O43365 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXA3O43365 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.02□□□□□ -1.93
HOXA3O43365 MIR3922-201ENST00000585192 84 ntBASIC3.02□□□□□ -1.93
HOXA3O43365 SNRPGP20-201ENST00000604477 205 ntBASIC3.02□□□□□ -1.93
HOXA3O43365 AC007179.3-201ENST00000604976 235 ntBASIC3.02□□□□□ -1.93
HOXA3O43365 U7.8-201ENST00000619968 63 ntBASIC3.02□□□□□ -1.93
HOXA3O43365 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HOXA3O43365 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.02□□□□□ -1.93
HOXA3O43365 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXA3O43365 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXA3O43365 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
HOXA3O43365 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HOXA3O43365 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HOXA3O43365 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
HOXA3O43365 AL109809.4-201ENST00000603520 2185 ntBASIC3.01□□□□□ -1.93
HOXA3O43365 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.01□□□□□ -1.93
HOXA3O43365 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXA3O43365 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
HOXA3O43365 RNU1-62P-201ENST00000362599 164 ntBASIC3.01□□□□□ -1.93
HOXA3O43365 Y_RNA.83-201ENST00000363005 113 ntBASIC3.01□□□□□ -1.93
HOXA3O43365 RNA5SP197-201ENST00000363357 119 ntBASIC3.01□□□□□ -1.93
HOXA3O43365 Y_RNA.199-201ENST00000364014 102 ntBASIC3.01□□□□□ -1.93
HOXA3O43365 RNA5SP72-201ENST00000364442 117 ntBASIC3.01□□□□□ -1.93
HOXA3O43365 Y_RNA.331-201ENST00000365267 102 ntBASIC3.01□□□□□ -1.93
HOXA3O43365 MIR320B2-201ENST00000408479 138 ntBASIC3.01□□□□□ -1.93
HOXA3O43365 AL138752.1-201ENST00000452964 351 ntBASIC3.01□□□□□ -1.93
HOXA3O43365 RPL23AP3-201ENST00000453844 468 ntBASIC3.01□□□□□ -1.93
HOXA3O43365 RNU6-625P-201ENST00000459412 107 ntBASIC3.01□□□□□ -1.93
HOXA3O43365 RN7SL293P-201ENST00000481765 281 ntBASIC3.01□□□□□ -1.93
HOXA3O43365 RPL7P47-201ENST00000497299 556 ntBASIC3.01□□□□□ -1.93
HOXA3O43365 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXA3O43365 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXA3O43365 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.01□□□□□ -1.93
HOXA3O43365 AL161756.2-201ENST00000604597 246 ntBASIC3.01□□□□□ -1.93
HOXA3O43365 AC022441.3-201ENST00000605737 136 ntBASIC3.01□□□□□ -1.93
HOXA3O43365 AC018692.3-201ENST00000623929 123 ntBASIC3.01□□□□□ -1.93
HOXA3O43365 AC244205.2-202ENST00000635781 342 ntBASIC3.01□□□□□ -1.93
HOXA3O43365 IGHVIII-44-202ENST00000636235 289 ntBASIC3.01□□□□□ -1.93
HOXA3O43365 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXA3O43365 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
HOXA3O43365 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.01□□□□□ -1.93
HOXA3O43365 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
HOXA3O43365 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXA3O43365 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
HOXA3O43365 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
HOXA3O43365 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3□□□□□ -1.93
HOXA3O43365 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
HOXA3O43365 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3□□□□□ -1.93
HOXA3O43365 MIR410-201ENST00000362222 80 ntBASIC3□□□□□ -1.93
HOXA3O43365 SNORA25.1-201ENST00000362326 128 ntBASIC3□□□□□ -1.93
HOXA3O43365 RNU4-15P-201ENST00000362613 141 ntBASIC3□□□□□ -1.93
HOXA3O43365 RNU6-727P-201ENST00000363592 107 ntBASIC3□□□□□ -1.93
HOXA3O43365 SNORA72.2-201ENST00000365028 127 ntBASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms