Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RPS4XP2-201ENST00000458402 793 ntBASIC3.38□□□□□ -1.87
CBX4O00257 U8.22-201ENST00000459141 133 ntBASIC3.38□□□□□ -1.87
CBX4O00257 RNA5SP54-201ENST00000516951 92 ntBASIC3.38□□□□□ -1.87
CBX4O00257 Y_RNA.713-201ENST00000517013 96 ntBASIC3.38□□□□□ -1.87
CBX4O00257 AL161670.1-201ENST00000554348 137 ntBASIC3.38□□□□□ -1.87
CBX4O00257 MIR4765-201ENST00000585007 77 ntBASIC3.38□□□□□ -1.87
CBX4O00257 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.38□□□□□ -1.87
CBX4O00257 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CBX4O00257 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CBX4O00257 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.37□□□□□ -1.87
CBX4O00257 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CBX4O00257 Y_RNA.40-201ENST00000362645 93 ntBASIC3.37□□□□□ -1.87
CBX4O00257 SNORD115-8-201ENST00000363856 82 ntBASIC3.37□□□□□ -1.87
CBX4O00257 SNORD115-38-201ENST00000365037 82 ntBASIC3.37□□□□□ -1.87
CBX4O00257 SET-203ENST00000372688 801 ntTSL 2 BASIC3.37□□□□□ -1.87
CBX4O00257 Y_RNA.452-201ENST00000384202 108 ntBASIC3.37□□□□□ -1.87
CBX4O00257 U3.19-201ENST00000390893 196 ntBASIC3.37□□□□□ -1.87
CBX4O00257 MIR208B-201ENST00000401172 77 ntBASIC3.37□□□□□ -1.87
CBX4O00257 AC097463.2-201ENST00000421074 142 ntBASIC3.37□□□□□ -1.87
CBX4O00257 SDAD1P3-201ENST00000427380 333 ntBASIC3.37□□□□□ -1.87
CBX4O00257 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.37□□□□□ -1.87
CBX4O00257 RPS15AP7-201ENST00000439294 405 ntBASIC3.37□□□□□ -1.87
CBX4O00257 RPL21P2-201ENST00000440049 481 ntBASIC3.37□□□□□ -1.87
CBX4O00257 MRPS36P2-201ENST00000512569 299 ntBASIC3.37□□□□□ -1.87
CBX4O00257 RNA5SP112-201ENST00000515937 99 ntBASIC3.37□□□□□ -1.87
CBX4O00257 RNU6-1143P-201ENST00000516125 104 ntBASIC3.37□□□□□ -1.87
CBX4O00257 RNU6-397P-201ENST00000516226 104 ntBASIC3.37□□□□□ -1.87
CBX4O00257 RNU6-58P-201ENST00000517143 103 ntBASIC3.37□□□□□ -1.87
CBX4O00257 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.37□□□□□ -1.87
CBX4O00257 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.37□□□□□ -1.87
CBX4O00257 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
CBX4O00257 EIF4BP1-201ENST00000554881 351 ntBASIC3.37□□□□□ -1.87
CBX4O00257 MIR5047-201ENST00000579212 100 ntBASIC3.37□□□□□ -1.87
CBX4O00257 MIR4503-201ENST00000582187 83 ntBASIC3.37□□□□□ -1.87
CBX4O00257 MIR3149-201ENST00000584629 83 ntBASIC3.37□□□□□ -1.87
CBX4O00257 RAC1P9-201ENST00000604990 392 ntBASIC3.37□□□□□ -1.87
CBX4O00257 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.37□□□□□ -1.87
CBX4O00257 AC006386.2-201ENST00000624491 75 ntBASIC3.37□□□□□ -1.87
CBX4O00257 AC012005.1-201ENST00000624575 75 ntBASIC3.37□□□□□ -1.87
CBX4O00257 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CBX4O00257 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.37□□□□□ -1.87
CBX4O00257 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.37□□□□□ -1.87
CBX4O00257 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
CBX4O00257 OR56A5-201ENST00000340110 738 ntBASIC3.36□□□□□ -1.87
CBX4O00257 MIR30E-201ENST00000362104 92 ntBASIC3.36□□□□□ -1.87
CBX4O00257 RNU5F-3P-201ENST00000363767 117 ntBASIC3.36□□□□□ -1.87
CBX4O00257 RNU6-574P-201ENST00000384265 107 ntBASIC3.36□□□□□ -1.87
CBX4O00257 SNORD78.2-201ENST00000391076 69 ntBASIC3.36□□□□□ -1.87
CBX4O00257 AIMP1P2-201ENST00000425294 312 ntBASIC3.36□□□□□ -1.87
CBX4O00257 EIF1P2-201ENST00000428233 350 ntBASIC3.36□□□□□ -1.87
CBX4O00257 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.36□□□□□ -1.87
CBX4O00257 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.36□□□□□ -1.87
CBX4O00257 RPEP5-201ENST00000441137 268 ntBASIC3.36□□□□□ -1.87
CBX4O00257 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.36□□□□□ -1.87
CBX4O00257 FCF1P4-201ENST00000448326 183 ntBASIC3.36□□□□□ -1.87
CBX4O00257 AP000705.1-201ENST00000454567 350 ntBASIC3.36□□□□□ -1.87
CBX4O00257 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.36□□□□□ -1.87
CBX4O00257 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.36□□□□□ -1.87
CBX4O00257 AL049830.2-201ENST00000480072 201 ntBASIC3.36□□□□□ -1.87
CBX4O00257 SNORA25.11-201ENST00000515935 105 ntBASIC3.36□□□□□ -1.87
CBX4O00257 MIR2276-201ENST00000516886 89 ntBASIC3.36□□□□□ -1.87
CBX4O00257 AC004817.2-201ENST00000561794 651 ntBASIC3.36□□□□□ -1.87
CBX4O00257 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.36□□□□□ -1.87
CBX4O00257 AC090517.1-201ENST00000569307 266 ntBASIC3.36□□□□□ -1.87
CBX4O00257 MIR5695-201ENST00000579717 85 ntBASIC3.36□□□□□ -1.87
CBX4O00257 MIR4425-201ENST00000580572 84 ntBASIC3.36□□□□□ -1.87
CBX4O00257 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.36□□□□□ -1.87
CBX4O00257 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.36□□□□□ -1.87
CBX4O00257 uc_338.1-201ENST00000612113 180 ntBASIC3.36□□□□□ -1.87
CBX4O00257 AC005296.1-201ENST00000616145 209 ntBASIC3.36□□□□□ -1.87
CBX4O00257 U4.1-201ENST00000620349 87 ntBASIC3.36□□□□□ -1.87
CBX4O00257 AC002064.3-201ENST00000623448 346 ntBASIC3.36□□□□□ -1.87
CBX4O00257 U6.92-201ENST00000636464 89 ntBASIC3.36□□□□□ -1.87
CBX4O00257 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
CBX4O00257 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
CBX4O00257 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CBX4O00257 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CBX4O00257 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
CBX4O00257 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.35□□□□□ -1.87
CBX4O00257 RNU1-70P-201ENST00000362618 164 ntBASIC3.35□□□□□ -1.87
CBX4O00257 RNU6-1301P-201ENST00000362724 104 ntBASIC3.35□□□□□ -1.87
CBX4O00257 RNU6-280P-201ENST00000364145 104 ntBASIC3.35□□□□□ -1.87
CBX4O00257 Y_RNA.556-201ENST00000384677 113 ntBASIC3.35□□□□□ -1.87
CBX4O00257 RNU6-159P-201ENST00000391080 106 ntBASIC3.35□□□□□ -1.87
CBX4O00257 RNU6-1093P-201ENST00000391194 107 ntBASIC3.35□□□□□ -1.87
CBX4O00257 WARS2P1-201ENST00000429678 537 ntBASIC3.35□□□□□ -1.87
CBX4O00257 AC096638.1-201ENST00000444678 216 ntBASIC3.35□□□□□ -1.87
CBX4O00257 UBE2DNL-203ENST00000474922 222 ntBASIC3.35□□□□□ -1.87
CBX4O00257 AL121594.1-201ENST00000475906 575 ntBASIC3.35□□□□□ -1.87
CBX4O00257 AC006445.1-201ENST00000491925 405 ntBASIC3.35□□□□□ -1.87
CBX4O00257 SNORA31.6-201ENST00000516241 130 ntBASIC3.35□□□□□ -1.87
CBX4O00257 RNU2-53P-201ENST00000516257 147 ntBASIC3.35□□□□□ -1.87
CBX4O00257 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC3.35□□□□□ -1.87
CBX4O00257 MIR4325-201ENST00000583049 90 ntBASIC3.35□□□□□ -1.87
CBX4O00257 AC073657.2-201ENST00000605661 303 ntBASIC3.35□□□□□ -1.87
CBX4O00257 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.35□□□□□ -1.87
CBX4O00257 AL162274.2-201ENST00000614406 332 ntBASIC3.35□□□□□ -1.87
CBX4O00257 TTK-211ENST00000627129 240 ntTSL 5 BASIC3.35□□□□□ -1.87
CBX4O00257 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.35□□□□□ -1.87
CBX4O00257 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms