Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC22.49■■□□□ 1.19
SMC1BQ8NDV3 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC22.49■■□□□ 1.19
SMC1BQ8NDV3 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
SMC1BQ8NDV3 MED15P5-201ENST00000423150 992 ntBASIC22.49■■□□□ 1.19
SMC1BQ8NDV3 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC22.49■■□□□ 1.19
SMC1BQ8NDV3 CDV3-207ENST00000508481 661 ntTSL 3 BASIC22.49■■□□□ 1.19
SMC1BQ8NDV3 AC145285.3-201ENST00000564603 959 ntBASIC22.49■■□□□ 1.19
SMC1BQ8NDV3 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC22.49■■□□□ 1.19
SMC1BQ8NDV3 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC22.49■■□□□ 1.19
SMC1BQ8NDV3 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC22.49■■□□□ 1.19
SMC1BQ8NDV3 AL592071.1-201ENST00000611956 408 ntBASIC22.49■■□□□ 1.19
SMC1BQ8NDV3 AC116407.3-201ENST00000623905 1129 ntBASIC22.49■■□□□ 1.19
SMC1BQ8NDV3 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC22.49■■□□□ 1.19
SMC1BQ8NDV3 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SMC1BQ8NDV3 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
SMC1BQ8NDV3 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SMC1BQ8NDV3 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
SMC1BQ8NDV3 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC22.49■■□□□ 1.19
SMC1BQ8NDV3 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 YBX2P1-201ENST00000394192 760 ntBASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 LBH-203ENST00000404397 543 ntTSL 4 BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 LBH-204ENST00000406087 559 ntTSL 4 BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
SMC1BQ8NDV3 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 POM121L3P-201ENST00000419331 1163 ntBASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 MINOS1P3-201ENST00000457048 203 ntBASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 SART3-203ENST00000546611 1184 ntBASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 AC008608.2-201ENST00000606089 416 ntBASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 AC124864.1-201ENST00000623408 392 ntBASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
SMC1BQ8NDV3 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 AL591424.1-201ENST00000442569 1213 ntBASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 NMU-202ENST00000505262 693 ntTSL 3 BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 GUSBP12-201ENST00000513727 720 ntBASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 MIR3180-5-201ENST00000583743 153 ntBASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 AC092364.2-202ENST00000597012 1073 ntBASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 AL591684.3-201ENST00000605187 298 ntBASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 AC104109.2-201ENST00000602919 1418 ntBASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SMC1BQ8NDV3 AL049796.1-201ENST00000565336 1766 ntBASIC22.45■■□□□ 1.19
SMC1BQ8NDV3 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SMC1BQ8NDV3 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms