Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC88AQ3V6T2 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC88AQ3V6T2 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC23.22■■□□□ 1.31
CCDC88AQ3V6T2 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC23.22■■□□□ 1.31
CCDC88AQ3V6T2 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC88AQ3V6T2 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC23.22■■□□□ 1.31
CCDC88AQ3V6T2 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC88AQ3V6T2 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC88AQ3V6T2 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC23.22■■□□□ 1.31
CCDC88AQ3V6T2 GPAT2P1-201ENST00000444924 1672 ntBASIC23.21■■□□□ 1.31
CCDC88AQ3V6T2 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC88AQ3V6T2 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC23.21■■□□□ 1.31
CCDC88AQ3V6T2 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC88AQ3V6T2 UBC-206ENST00000538617 1303 ntTSL 5 BASIC23.21■■□□□ 1.31
CCDC88AQ3V6T2 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC88AQ3V6T2 AKR1C7P-201ENST00000305623 895 ntBASIC23.21■■□□□ 1.31
CCDC88AQ3V6T2 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC88AQ3V6T2 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC23.21■■□□□ 1.31
CCDC88AQ3V6T2 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC88AQ3V6T2 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC88AQ3V6T2 AP001005.1-201ENST00000571755 1248 ntBASIC23.21■■□□□ 1.31
CCDC88AQ3V6T2 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC23.21■■□□□ 1.31
CCDC88AQ3V6T2 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC88AQ3V6T2 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC88AQ3V6T2 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC23.2■■□□□ 1.31
CCDC88AQ3V6T2 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
CCDC88AQ3V6T2 KRT18P13-201ENST00000400056 1290 ntBASIC23.2■■□□□ 1.3
CCDC88AQ3V6T2 AC011498.5-201ENST00000592027 486 ntBASIC23.2■■□□□ 1.3
CCDC88AQ3V6T2 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC88AQ3V6T2 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC88AQ3V6T2 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC23.2■■□□□ 1.3
CCDC88AQ3V6T2 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC23.2■■□□□ 1.3
CCDC88AQ3V6T2 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 IL11-204ENST00000590625 1028 ntTSL 2 BASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 AL773604.1-201ENST00000617417 272 ntBASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 AC233702.3-201ENST00000578656 1387 ntBASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 AC112907.3-201ENST00000577781 2400 ntBASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
CCDC88AQ3V6T2 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 ABR-204ENST00000543210 1049 ntTSL 2 BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 AC099336.1-202ENST00000602961 463 ntBASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 AL136038.4-201ENST00000603606 1261 ntBASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 AC024243.1-201ENST00000609234 778 ntBASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 MED17-221ENST00000639724 2317 ntTSL 5 BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC88AQ3V6T2 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 SLC25A1P1-201ENST00000528351 927 ntBASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms