Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 MFSD8-216ENST00000641147 4009 ntBASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 SNORA1.3-201ENST00000384676 136 ntBASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 SNORD96B-201ENST00000386148 79 ntBASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 AL133475.1-201ENST00000404414 305 ntBASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 AL590004.2-201ENST00000404787 371 ntBASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 RNA5SP136-201ENST00000410906 107 ntBASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 snoU13.14-201ENST00000459372 104 ntBASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 RNU6ATAC17P-201ENST00000516074 71 ntBASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 TOMM20P2-201ENST00000540082 421 ntBASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 PARP1P2-201ENST00000556806 195 ntBASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 AC209154.1-201ENST00000582156 337 ntBASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 AL020997.2-201ENST00000602607 184 ntBASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 uc_338.4-201ENST00000616635 176 ntBASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 AL133412.1-201ENST00000380194 2992 ntBASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
PCDHB3Q9Y5E6 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 AC139713.2-215ENST00000641428 5037 ntBASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 AC068254.2-201ENST00000623938 3577 ntBASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 AL356292.1-201ENST00000283110 373 ntBASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 SNORA27.1-201ENST00000362604 124 ntBASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 Y_RNA.49-201ENST00000362714 112 ntBASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 Y_RNA.219-201ENST00000364232 113 ntBASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 MIR586-201ENST00000385035 97 ntBASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 AC002075.2-201ENST00000425207 252 ntBASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 AL161651.1-201ENST00000440882 223 ntBASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 AC021205.2-201ENST00000480069 347 ntBASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 AC078817.1-201ENST00000492623 435 ntBASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 SCARNA22-201ENST00000503991 125 ntBASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 RN7SL690P-201ENST00000582087 240 ntBASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 MIR5096-201ENST00000583713 70 ntBASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 AC140113.4-201ENST00000622087 222 ntBASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 SCN1A-220ENST00000641603 12506 ntBASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.61□□□□□ -1.67
PCDHB3Q9Y5E6 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 RNA5SP332-201ENST00000391063 115 ntBASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 U3.30-201ENST00000391308 210 ntBASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 AC016831.4-201ENST00000438302 307 ntBASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 RPL23AP62-201ENST00000463396 453 ntBASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 AC083906.5-201ENST00000503722 328 ntBASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 RNU6-1146P-201ENST00000516282 102 ntBASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 RNU6-109P-201ENST00000516364 107 ntBASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 RNU6-184P-201ENST00000516514 107 ntBASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 RNU6-365P-201ENST00000517113 106 ntBASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 AC022726.1-201ENST00000587475 207 ntBASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 AL121932.1-201ENST00000605542 214 ntBASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 FAM27B-201ENST00000610601 213 ntBASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 MIR6853-201ENST00000619642 74 ntBASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 AC134878.1-201ENST00000619901 243 ntBASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 AC005086.4-201ENST00000623065 213 ntBASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
PCDHB3Q9Y5E6 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.59□□□□□ -1.67
PCDHB3Q9Y5E6 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
PCDHB3Q9Y5E6 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
PCDHB3Q9Y5E6 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
PCDHB3Q9Y5E6 SNORA63.5-201ENST00000363548 123 ntBASIC4.59□□□□□ -1.67
PCDHB3Q9Y5E6 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC4.59□□□□□ -1.67
PCDHB3Q9Y5E6 NDUFB1P1-201ENST00000435191 180 ntBASIC4.59□□□□□ -1.67
PCDHB3Q9Y5E6 RN7SL585P-201ENST00000470538 280 ntBASIC4.59□□□□□ -1.67
PCDHB3Q9Y5E6 AC107626.1-201ENST00000471084 183 ntBASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms