Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 HMGN2P16-201ENST00000456802 261 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 RPL31P41-201ENST00000477967 372 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 RN7SL810P-201ENST00000493031 276 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 AC025445.1-201ENST00000502728 300 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 AIG1P1-201ENST00000503376 148 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 RAC1P5-201ENST00000512182 576 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 RNA5SP170-201ENST00000517150 101 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 HMGN2P15-201ENST00000585707 270 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 AC011471.1-201ENST00000585766 187 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 AC015813.4-201ENST00000610469 179 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 AC005520.5-201ENST00000613926 164 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 Y_RNA.802-201ENST00000614892 130 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 uc_338.32-201ENST00000615087 172 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 MIR4679-1-201ENST00000637619 75 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 LINC02471-203ENST00000641941 4752 ntBASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 RNU1-62P-201ENST00000362599 164 ntBASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 RNY1P11-201ENST00000363759 113 ntBASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 SNORD87-201ENST00000364849 89 ntBASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 RNU6-1264P-201ENST00000383891 107 ntBASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 SNORA72.4-201ENST00000384174 132 ntBASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 U3.26-201ENST00000391236 204 ntBASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 RNU6-1064P-201ENST00000410626 104 ntBASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 RPS29P33-201ENST00000456717 146 ntBASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 RN7SL481P-201ENST00000477764 299 ntBASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 RPL23AP70-201ENST00000483361 460 ntBASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 IGLVIV-65-201ENST00000517313 360 ntBASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 TOMM20P2-201ENST00000540082 421 ntBASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 SNRPGP20-201ENST00000604477 205 ntBASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
HIF3AQ9Y2N7 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 MIR448-201ENST00000362131 111 ntBASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 RNU6-1180P-201ENST00000364935 107 ntBASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 MIR513A2-201ENST00000385249 127 ntBASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 RNA5SP104-201ENST00000410989 118 ntBASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 CYCSP49-201ENST00000420810 319 ntBASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 RPL23AP82-202ENST00000427528 469 ntBASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 RNU6-561P-201ENST00000516222 102 ntBASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 AC105137.2-201ENST00000569073 466 ntBASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 AC025946.2-201ENST00000603398 234 ntBASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 FAM27D1-201ENST00000612308 341 ntBASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
HIF3AQ9Y2N7 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 RNU1-14P-201ENST00000362759 152 ntBASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 RNU6-1255P-201ENST00000363434 112 ntBASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 SNORD115-30-201ENST00000364117 82 ntBASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 RNA5SP505-201ENST00000364748 108 ntBASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 RNU6-643P-201ENST00000384018 107 ntBASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 RNU6-476P-201ENST00000384726 107 ntBASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 MIR15B-201ENST00000385045 98 ntBASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 RNA5SP332-201ENST00000391063 115 ntBASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 AL591034.1-201ENST00000407447 340 ntBASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 RNU6-855P-201ENST00000410395 104 ntBASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 AC107626.1-201ENST00000471084 183 ntBASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 RN7SL691P-201ENST00000494487 301 ntBASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 RNU5F-2P-201ENST00000516066 82 ntBASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 RNU1-117P-201ENST00000517041 158 ntBASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 AP001328.1-201ENST00000528550 176 ntBASIC3.8□□□□□ -1.8
HIF3AQ9Y2N7 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms