Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.43□□□□□ -1.7
NOD1Q9Y239 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.43□□□□□ -1.7
NOD1Q9Y239 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC4.43□□□□□ -1.7
NOD1Q9Y239 RNU4-17P-201ENST00000365598 141 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 RNU6-1264P-201ENST00000383891 107 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 AL357075.1-201ENST00000404107 726 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 U3.40-201ENST00000408706 208 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 RPL23AP83-201ENST00000434984 473 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 Y_RNA.637-201ENST00000459424 114 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 RPL30P14-201ENST00000482744 348 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 AC006499.6-201ENST00000511169 607 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 RNU6-436P-201ENST00000516171 114 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 RNA5SP309-201ENST00000516670 106 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 RNU2-12P-201ENST00000517216 168 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 TGIF1P1-201ENST00000558095 802 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 AC011471.1-201ENST00000585766 187 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 AC091167.4-201ENST00000605079 184 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 AC019176.2-201ENST00000611579 315 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 MIR7702-201ENST00000621931 59 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 AC018692.3-201ENST00000623929 123 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 AL034408.1-202ENST00000636088 415 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
NOD1Q9Y239 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.43□□□□□ -1.7
NOD1Q9Y239 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
NOD1Q9Y239 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
NOD1Q9Y239 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
NOD1Q9Y239 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.42□□□□□ -1.7
NOD1Q9Y239 RNU6-312P-201ENST00000364629 107 ntBASIC4.42□□□□□ -1.7
NOD1Q9Y239 SNORA73.2-201ENST00000364946 201 ntBASIC4.42□□□□□ -1.7
NOD1Q9Y239 Y_RNA.343-201ENST00000365354 112 ntBASIC4.42□□□□□ -1.7
NOD1Q9Y239 RNU6-449P-201ENST00000383914 107 ntBASIC4.42□□□□□ -1.7
NOD1Q9Y239 Y_RNA.412-201ENST00000384001 104 ntBASIC4.42□□□□□ -1.7
NOD1Q9Y239 RNU6-1117P-201ENST00000384525 104 ntBASIC4.42□□□□□ -1.7
NOD1Q9Y239 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC4.42□□□□□ -1.7
NOD1Q9Y239 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.42□□□□□ -1.7
NOD1Q9Y239 AL441985.1-201ENST00000457727 251 ntBASIC4.42□□□□□ -1.7
NOD1Q9Y239 RNU7-143P-201ENST00000516781 65 ntBASIC4.42□□□□□ -1.7
NOD1Q9Y239 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.42□□□□□ -1.7
NOD1Q9Y239 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.42□□□□□ -1.7
NOD1Q9Y239 AC025946.2-201ENST00000603398 234 ntBASIC4.42□□□□□ -1.7
NOD1Q9Y239 MIR432-201ENST00000606207 94 ntBASIC4.42□□□□□ -1.7
NOD1Q9Y239 RNU6-91P-201ENST00000607774 107 ntBASIC4.42□□□□□ -1.7
NOD1Q9Y239 PCGEM1.1-201ENST00000613431 131 ntBASIC4.42□□□□□ -1.7
NOD1Q9Y239 AF117829.1-206ENST00000621883 3802 ntBASIC4.42□□□□□ -1.7
NOD1Q9Y239 AC140113.4-201ENST00000622087 222 ntBASIC4.42□□□□□ -1.7
NOD1Q9Y239 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.42□□□□□ -1.7
NOD1Q9Y239 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.42□□□□□ -1.7
NOD1Q9Y239 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
NOD1Q9Y239 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
NOD1Q9Y239 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.41□□□□□ -1.7
NOD1Q9Y239 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
NOD1Q9Y239 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.41□□□□□ -1.7
NOD1Q9Y239 Y_RNA.40-201ENST00000362645 93 ntBASIC4.41□□□□□ -1.7
NOD1Q9Y239 Y_RNA.182-201ENST00000363880 111 ntBASIC4.41□□□□□ -1.7
NOD1Q9Y239 RNU6-454P-201ENST00000364292 107 ntBASIC4.41□□□□□ -1.7
NOD1Q9Y239 MIR708-201ENST00000390708 88 ntBASIC4.41□□□□□ -1.7
NOD1Q9Y239 SNORA3.3-201ENST00000408712 125 ntBASIC4.41□□□□□ -1.7
NOD1Q9Y239 RNA5SP201-201ENST00000410316 124 ntBASIC4.41□□□□□ -1.7
NOD1Q9Y239 RNU2-49P-201ENST00000410666 184 ntBASIC4.41□□□□□ -1.7
NOD1Q9Y239 AC245291.1-201ENST00000419501 328 ntBASIC4.41□□□□□ -1.7
NOD1Q9Y239 AL714022.1-201ENST00000439897 151 ntBASIC4.41□□□□□ -1.7
NOD1Q9Y239 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.41□□□□□ -1.7
NOD1Q9Y239 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.41□□□□□ -1.7
NOD1Q9Y239 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.41□□□□□ -1.7
NOD1Q9Y239 AC002076.2-201ENST00000617362 122 ntBASIC4.41□□□□□ -1.7
NOD1Q9Y239 AC009093.8-201ENST00000641769 292 ntBASIC4.41□□□□□ -1.7
NOD1Q9Y239 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
NOD1Q9Y239 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
NOD1Q9Y239 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC4.4□□□□□ -1.7
NOD1Q9Y239 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
NOD1Q9Y239 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.4□□□□□ -1.7
NOD1Q9Y239 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.4□□□□□ -1.7
NOD1Q9Y239 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
NOD1Q9Y239 RNU1-15P-201ENST00000353977 144 ntBASIC4.4□□□□□ -1.71
NOD1Q9Y239 RNA5SP119-201ENST00000362715 117 ntBASIC4.4□□□□□ -1.71
NOD1Q9Y239 Y_RNA.121-201ENST00000363309 113 ntBASIC4.4□□□□□ -1.71
NOD1Q9Y239 Y_RNA.497-201ENST00000384447 98 ntBASIC4.4□□□□□ -1.71
NOD1Q9Y239 RNU6-763P-201ENST00000390865 106 ntBASIC4.4□□□□□ -1.71
NOD1Q9Y239 AC027124.2-201ENST00000428249 105 ntBASIC4.4□□□□□ -1.71
NOD1Q9Y239 PRSS3P4-201ENST00000453323 162 ntBASIC4.4□□□□□ -1.71
NOD1Q9Y239 RPS27AP9-201ENST00000477681 438 ntBASIC4.4□□□□□ -1.71
NOD1Q9Y239 RPL31P41-201ENST00000477967 372 ntBASIC4.4□□□□□ -1.71
NOD1Q9Y239 RPL32P34-201ENST00000486380 400 ntBASIC4.4□□□□□ -1.71
NOD1Q9Y239 AC026403.1-201ENST00000518938 295 ntBASIC4.4□□□□□ -1.71
NOD1Q9Y239 AC027176.1-201ENST00000560204 514 ntBASIC4.4□□□□□ -1.71
NOD1Q9Y239 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
NOD1Q9Y239 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
NOD1Q9Y239 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
NOD1Q9Y239 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.39□□□□□ -1.71
NOD1Q9Y239 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.39□□□□□ -1.71
NOD1Q9Y239 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.39□□□□□ -1.71
NOD1Q9Y239 Y_RNA.23-201ENST00000362496 106 ntBASIC4.39□□□□□ -1.71
NOD1Q9Y239 RNU6-1010P-201ENST00000362757 107 ntBASIC4.39□□□□□ -1.71
NOD1Q9Y239 Y_RNA.75-201ENST00000362927 97 ntBASIC4.39□□□□□ -1.71
NOD1Q9Y239 SNORD114-19-201ENST00000363072 75 ntBASIC4.39□□□□□ -1.71
NOD1Q9Y239 RNU6-525P-201ENST00000363685 104 ntBASIC4.39□□□□□ -1.71
NOD1Q9Y239 SNORD87-201ENST00000364849 89 ntBASIC4.39□□□□□ -1.71
NOD1Q9Y239 Y_RNA.357-201ENST00000365487 109 ntBASIC4.39□□□□□ -1.71
NOD1Q9Y239 Y_RNA.400-201ENST00000383963 111 ntBASIC4.39□□□□□ -1.71
NOD1Q9Y239 MIR186-201ENST00000384988 86 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 162.8 ms