Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 RNA5SP513-201ENST00000364648 118 ntBASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 Y_RNA.572-201ENST00000384757 98 ntBASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 MIR548B-201ENST00000385247 97 ntBASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 RPL23AP52-201ENST00000439311 478 ntBASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 AL162151.2-201ENST00000448875 158 ntBASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 AC012671.1-201ENST00000451912 203 ntBASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 AC112771.1-201ENST00000463581 102 ntBASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 RPL36AP48-201ENST00000485521 314 ntBASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 AL670379.2-201ENST00000604983 252 ntBASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
LIMD1Q9UGP4 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
LIMD1Q9UGP4 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
LIMD1Q9UGP4 MIR208A-201ENST00000362287 71 ntBASIC4.59□□□□□ -1.67
LIMD1Q9UGP4 RNA5SP307-201ENST00000362863 116 ntBASIC4.59□□□□□ -1.67
LIMD1Q9UGP4 Y_RNA.229-201ENST00000364347 113 ntBASIC4.59□□□□□ -1.67
LIMD1Q9UGP4 RNU6-1305P-201ENST00000364353 104 ntBASIC4.59□□□□□ -1.67
LIMD1Q9UGP4 AL606845.1-201ENST00000404881 255 ntBASIC4.59□□□□□ -1.67
LIMD1Q9UGP4 AL445584.1-201ENST00000431451 330 ntBASIC4.59□□□□□ -1.67
LIMD1Q9UGP4 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC4.59□□□□□ -1.67
LIMD1Q9UGP4 CPHL1P-201ENST00000461341 3407 ntBASIC4.59□□□□□ -1.67
LIMD1Q9UGP4 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
LIMD1Q9UGP4 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC4.59□□□□□ -1.67
LIMD1Q9UGP4 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.59□□□□□ -1.67
LIMD1Q9UGP4 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC4.59□□□□□ -1.67
LIMD1Q9UGP4 AC099778.2-201ENST00000610904 211 ntBASIC4.59□□□□□ -1.67
LIMD1Q9UGP4 AC140479.6-201ENST00000633535 357 ntBASIC4.59□□□□□ -1.67
LIMD1Q9UGP4 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
LIMD1Q9UGP4 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.59□□□□□ -1.68
LIMD1Q9UGP4 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
LIMD1Q9UGP4 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
LIMD1Q9UGP4 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
LIMD1Q9UGP4 AC000123.3-201ENST00000624029 4975 ntBASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 snoU2_19.1-201ENST00000362361 80 ntBASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 Y_RNA.542-201ENST00000384641 111 ntBASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 SNORA20-201ENST00000384662 132 ntBASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 SNORD96B-201ENST00000386148 79 ntBASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 AL035461.1-201ENST00000421490 332 ntBASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 HSPE1P21-201ENST00000438283 308 ntBASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 RPS4XP2-201ENST00000458402 793 ntBASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 GNRHR2P1-201ENST00000555315 631 ntBASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 MIR6844-201ENST00000637122 62 ntBASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
LIMD1Q9UGP4 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 AC006504.1-201ENST00000562493 3666 ntBASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 AL136164.4-201ENST00000625013 2135 ntBASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 SNORA71.3-201ENST00000362582 128 ntBASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 Y_RNA.333-201ENST00000365274 102 ntBASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 RNU6-407P-201ENST00000365280 104 ntBASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 RNA5SP372-201ENST00000390836 115 ntBASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 MIR1185-2-201ENST00000408687 86 ntBASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 AL691449.1-201ENST00000426570 421 ntBASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 YME1L1P1-201ENST00000429435 297 ntBASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 RPS27P1-201ENST00000450552 247 ntBASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 HSPE1P13-201ENST00000451143 297 ntBASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 RNA5SP49-201ENST00000516450 115 ntBASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 AC079587.1-201ENST00000603846 277 ntBASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 MIR548AY-201ENST00000617669 107 ntBASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
LIMD1Q9UGP4 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 MIR200C-201ENST00000384980 68 ntBASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 MIR29B2-201ENST00000385055 81 ntBASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 MIR873-201ENST00000401120 77 ntBASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 RPS29P7-201ENST00000439662 171 ntBASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 RNU7-197P-201ENST00000458836 62 ntBASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 AC146944.2-203ENST00000502493 354 ntBASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 AC139495.1-202ENST00000513164 354 ntBASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 RNU4-57P-201ENST00000515980 135 ntBASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 AC011603.4-201ENST00000611325 277 ntBASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 AP001340.1-201ENST00000624405 217 ntBASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 116.9 ms