Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC104027.1-201ENST00000521887 300 ntBASIC3.15□□□□□ -1.91
DKK3Q9UBP4 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
DKK3Q9UBP4 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.15□□□□□ -1.91
DKK3Q9UBP4 HSBP1P1-201ENST00000555205 166 ntBASIC3.15□□□□□ -1.91
DKK3Q9UBP4 AC004584.2-201ENST00000570407 410 ntBASIC3.15□□□□□ -1.91
DKK3Q9UBP4 MIR3945-201ENST00000581853 98 ntBASIC3.15□□□□□ -1.91
DKK3Q9UBP4 UBL5P2-201ENST00000583788 219 ntBASIC3.15□□□□□ -1.91
DKK3Q9UBP4 MIR3149-201ENST00000584629 83 ntBASIC3.15□□□□□ -1.91
DKK3Q9UBP4 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.15□□□□□ -1.91
DKK3Q9UBP4 AL021879.1-201ENST00000611756 288 ntBASIC3.15□□□□□ -1.91
DKK3Q9UBP4 HMGB1P24-202ENST00000615653 685 ntBASIC3.15□□□□□ -1.91
DKK3Q9UBP4 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.15□□□□□ -1.91
DKK3Q9UBP4 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.15□□□□□ -1.91
DKK3Q9UBP4 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.15□□□□□ -1.91
DKK3Q9UBP4 CDC27P3-201ENST00000635418 1910 ntBASIC3.15□□□□□ -1.91
DKK3Q9UBP4 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
DKK3Q9UBP4 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
DKK3Q9UBP4 SNORD14.1-201ENST00000365609 90 ntBASIC3.14□□□□□ -1.91
DKK3Q9UBP4 AL139095.1-201ENST00000404326 391 ntBASIC3.14□□□□□ -1.91
DKK3Q9UBP4 MIR1302-3-201ENST00000408128 138 ntBASIC3.14□□□□□ -1.91
DKK3Q9UBP4 RNA5SP492-201ENST00000411330 114 ntBASIC3.14□□□□□ -1.91
DKK3Q9UBP4 AC007098.1-201ENST00000420122 367 ntBASIC3.14□□□□□ -1.91
DKK3Q9UBP4 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.14□□□□□ -1.91
DKK3Q9UBP4 OOSP1P1-201ENST00000423265 274 ntBASIC3.14□□□□□ -1.91
DKK3Q9UBP4 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.14□□□□□ -1.91
DKK3Q9UBP4 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.14□□□□□ -1.91
DKK3Q9UBP4 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.14□□□□□ -1.91
DKK3Q9UBP4 RNU6-911P-201ENST00000516523 104 ntBASIC3.14□□□□□ -1.91
DKK3Q9UBP4 SCARNA20.6-201ENST00000517251 106 ntBASIC3.14□□□□□ -1.91
DKK3Q9UBP4 CR383656.8-201ENST00000549046 145 ntBASIC3.14□□□□□ -1.91
DKK3Q9UBP4 MIR4672-201ENST00000583126 81 ntBASIC3.14□□□□□ -1.91
DKK3Q9UBP4 MIR5188-201ENST00000583467 113 ntBASIC3.14□□□□□ -1.91
DKK3Q9UBP4 VN1R91P-201ENST00000594377 169 ntBASIC3.14□□□□□ -1.91
DKK3Q9UBP4 AC010620.2-201ENST00000600135 313 ntBASIC3.14□□□□□ -1.91
DKK3Q9UBP4 AC019159.1-201ENST00000605094 187 ntBASIC3.14□□□□□ -1.91
DKK3Q9UBP4 AC010205.1-201ENST00000616668 449 ntBASIC3.14□□□□□ -1.91
DKK3Q9UBP4 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.14□□□□□ -1.91
DKK3Q9UBP4 U4.1-201ENST00000620349 87 ntBASIC3.14□□□□□ -1.91
DKK3Q9UBP4 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
DKK3Q9UBP4 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
DKK3Q9UBP4 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
DKK3Q9UBP4 AC026241.1-201ENST00000517873 2142 ntBASIC3.13□□□□□ -1.91
DKK3Q9UBP4 Y_RNA.152-201ENST00000363578 100 ntBASIC3.13□□□□□ -1.91
DKK3Q9UBP4 RNU6-898P-201ENST00000365627 104 ntBASIC3.13□□□□□ -1.91
DKK3Q9UBP4 Y_RNA.401-201ENST00000383965 117 ntBASIC3.13□□□□□ -1.91
DKK3Q9UBP4 RNU6-574P-201ENST00000384265 107 ntBASIC3.13□□□□□ -1.91
DKK3Q9UBP4 Y_RNA.574-201ENST00000384766 95 ntBASIC3.13□□□□□ -1.91
DKK3Q9UBP4 RNU6-700P-201ENST00000391043 107 ntBASIC3.13□□□□□ -1.91
DKK3Q9UBP4 MIR1252-201ENST00000408861 65 ntBASIC3.13□□□□□ -1.91
DKK3Q9UBP4 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC3.13□□□□□ -1.91
DKK3Q9UBP4 RN7SKP210-201ENST00000459176 261 ntBASIC3.13□□□□□ -1.91
DKK3Q9UBP4 RPS27AP10-201ENST00000496103 208 ntBASIC3.13□□□□□ -1.91
DKK3Q9UBP4 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.13□□□□□ -1.91
DKK3Q9UBP4 RNA5SP341-201ENST00000516261 117 ntBASIC3.13□□□□□ -1.91
DKK3Q9UBP4 AP002404.1-201ENST00000532005 451 ntBASIC3.13□□□□□ -1.91
DKK3Q9UBP4 AL359198.2-201ENST00000611836 194 ntBASIC3.13□□□□□ -1.91
DKK3Q9UBP4 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.13□□□□□ -1.91
DKK3Q9UBP4 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.13□□□□□ -1.91
DKK3Q9UBP4 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.13□□□□□ -1.91
DKK3Q9UBP4 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.13□□□□□ -1.91
DKK3Q9UBP4 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
DKK3Q9UBP4 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
DKK3Q9UBP4 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
DKK3Q9UBP4 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.12□□□□□ -1.91
DKK3Q9UBP4 MIR422A-201ENST00000362286 90 ntBASIC3.12□□□□□ -1.91
DKK3Q9UBP4 Y_RNA.106-201ENST00000363189 100 ntBASIC3.12□□□□□ -1.91
DKK3Q9UBP4 RNU1-100P-201ENST00000365255 165 ntBASIC3.12□□□□□ -1.91
DKK3Q9UBP4 SNORA63.7-201ENST00000365579 123 ntBASIC3.12□□□□□ -1.91
DKK3Q9UBP4 Y_RNA.526-201ENST00000384572 110 ntBASIC3.12□□□□□ -1.91
DKK3Q9UBP4 RNU6-1109P-201ENST00000391187 107 ntBASIC3.12□□□□□ -1.91
DKK3Q9UBP4 BTF3L4P2-201ENST00000392798 346 ntBASIC3.12□□□□□ -1.91
DKK3Q9UBP4 AC114482.1-201ENST00000418010 247 ntBASIC3.12□□□□□ -1.91
DKK3Q9UBP4 AC099548.1-201ENST00000421443 426 ntBASIC3.12□□□□□ -1.91
DKK3Q9UBP4 DPH3P2-201ENST00000422618 250 ntBASIC3.12□□□□□ -1.91
DKK3Q9UBP4 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.12□□□□□ -1.91
DKK3Q9UBP4 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.12□□□□□ -1.91
DKK3Q9UBP4 RPL39P40-201ENST00000445481 146 ntBASIC3.12□□□□□ -1.91
DKK3Q9UBP4 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.12□□□□□ -1.91
DKK3Q9UBP4 RNU6-928P-201ENST00000516876 104 ntBASIC3.12□□□□□ -1.91
DKK3Q9UBP4 AL590705.4-201ENST00000532209 134 ntBASIC3.12□□□□□ -1.91
DKK3Q9UBP4 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.12□□□□□ -1.91
DKK3Q9UBP4 7SK.7-201ENST00000603504 247 ntBASIC3.12□□□□□ -1.91
DKK3Q9UBP4 AC124312.5-201ENST00000604451 268 ntBASIC3.12□□□□□ -1.91
DKK3Q9UBP4 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
DKK3Q9UBP4 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
DKK3Q9UBP4 RNU6-527P-201ENST00000363425 104 ntBASIC3.11□□□□□ -1.91
DKK3Q9UBP4 RNU1-140P-201ENST00000365040 165 ntBASIC3.11□□□□□ -1.91
DKK3Q9UBP4 SET-203ENST00000372688 801 ntTSL 2 BASIC3.11□□□□□ -1.91
DKK3Q9UBP4 RNA5SP354-201ENST00000391247 136 ntBASIC3.11□□□□□ -1.91
DKK3Q9UBP4 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
DKK3Q9UBP4 MTCO3P19-201ENST00000415864 321 ntBASIC3.11□□□□□ -1.91
DKK3Q9UBP4 BPY2DP-201ENST00000422208 265 ntBASIC3.11□□□□□ -1.91
DKK3Q9UBP4 AL591043.1-201ENST00000432461 424 ntBASIC3.11□□□□□ -1.91
DKK3Q9UBP4 HMGN2P10-201ENST00000448085 265 ntBASIC3.11□□□□□ -1.91
DKK3Q9UBP4 snoU13.28-201ENST00000459235 104 ntBASIC3.11□□□□□ -1.91
DKK3Q9UBP4 AC010655.3-201ENST00000478818 450 ntBASIC3.11□□□□□ -1.91
DKK3Q9UBP4 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.11□□□□□ -1.91
DKK3Q9UBP4 RPL23AP49-201ENST00000492925 468 ntBASIC3.11□□□□□ -1.91
DKK3Q9UBP4 AC008885.1-201ENST00000514930 301 ntBASIC3.11□□□□□ -1.91
DKK3Q9UBP4 RNA5SP217-201ENST00000515959 91 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms