Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 Y_RNA.41-201ENST00000362646 102 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 RNU6-1285P-201ENST00000363480 105 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 RNU4-66P-201ENST00000365199 138 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 Y_RNA.378-201ENST00000365652 113 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 RNU6-780P-201ENST00000391030 104 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 HMGN2P39-201ENST00000398005 273 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 RNU2-48P-201ENST00000410694 191 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 CYCSP49-201ENST00000420810 319 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 RPL21P99-201ENST00000480369 423 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 RNU6-965P-201ENST00000516721 96 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 COPS8P3-201ENST00000526024 482 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 AC007375.1-201ENST00000554513 578 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 AL512360.1-201ENST00000555346 234 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 ANP32BP3-201ENST00000559213 706 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 MIR4529-201ENST00000578110 78 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 MIR3941-201ENST00000582572 103 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 BNIP3P16-201ENST00000589779 534 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 AC004908.3-201ENST00000610248 625 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 AC098657.3-201ENST00000620434 263 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 AL359880.1-201ENST00000621879 266 ntBASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
VPS54Q9P1Q0 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2□□□□□ -2.09
VPS54Q9P1Q0 SNORD48-201ENST00000364953 64 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 RNU4-20P-201ENST00000365601 151 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 RNU6-546P-201ENST00000383991 107 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 RNU6-43P-201ENST00000384302 107 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 Y_RNA.481-201ENST00000384373 102 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 SNORD73A-201ENST00000386062 65 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 RPS29P13-201ENST00000402041 169 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 Y_RNA.597-201ENST00000410463 100 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2□□□□□ -2.09
VPS54Q9P1Q0 TRAPPC2P3-201ENST00000443200 321 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2□□□□□ -2.09
VPS54Q9P1Q0 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2□□□□□ -2.09
VPS54Q9P1Q0 AC104564.1-201ENST00000493028 407 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 AC105313.1-201ENST00000509121 353 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC2□□□□□ -2.09
VPS54Q9P1Q0 SNORA14.1-201ENST00000516113 141 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 Y_RNA.704-201ENST00000516851 102 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 CYCSP27-201ENST00000527643 293 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 AP000763.2-201ENST00000540641 163 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 AC245505.1-201ENST00000556398 224 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 AC026271.5-201ENST00000577873 130 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 AC092954.2-201ENST00000609103 430 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 AL627230.6-201ENST00000611129 280 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 AC073534.2-201ENST00000620377 381 ntBASIC2□□□□□ -2.09
VPS54Q9P1Q0 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 Y_RNA.372-201ENST00000365599 102 ntBASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 POLHP1-201ENST00000411806 470 ntBASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 MTCO3P41-201ENST00000414801 328 ntBASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 RPS15AP10-201ENST00000432472 382 ntBASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 AL137159.1-201ENST00000452808 512 ntBASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 RNU6-189P-201ENST00000516120 101 ntBASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 Y_RNA.693-201ENST00000516641 110 ntBASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 CENPUP1-201ENST00000526649 1202 ntBASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 AC092747.3-201ENST00000603769 301 ntBASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 SNRPGP17-201ENST00000603780 214 ntBASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
VPS54Q9P1Q0 RNU6-1159P-201ENST00000362933 107 ntBASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 RNU6-648P-201ENST00000410190 107 ntBASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 RNU6-1068P-201ENST00000410958 103 ntBASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 AL358453.1-201ENST00000422522 250 ntBASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 USP9YP18-201ENST00000425912 695 ntBASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 MTND3P16-201ENST00000452205 344 ntBASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 HMGB1P35-201ENST00000503360 598 ntBASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 RNU6-250P-201ENST00000516958 103 ntBASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 RN7SKP256-201ENST00000517201 314 ntBASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 AC104581.2-201ENST00000572227 430 ntBASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 AL096840.1-201ENST00000603287 93 ntBASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
VPS54Q9P1Q0 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 RNU6-743P-201ENST00000364151 106 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 SNORD32A-201ENST00000364805 84 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 Y_RNA.318-201ENST00000365131 97 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 RNU6-483P-201ENST00000384088 108 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 MIR29B2-201ENST00000385055 81 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 AL627390.1-201ENST00000396055 340 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms