Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 TOMM22P6-201ENST00000465035 409 ntBASIC3.19□□□□□ -1.9
TDP1Q9NUW8 SNORA40.14-201ENST00000516543 86 ntBASIC3.19□□□□□ -1.9
TDP1Q9NUW8 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.19□□□□□ -1.9
TDP1Q9NUW8 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
TDP1Q9NUW8 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.19□□□□□ -1.9
TDP1Q9NUW8 AC105137.2-201ENST00000569073 466 ntBASIC3.19□□□□□ -1.9
TDP1Q9NUW8 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.19□□□□□ -1.9
TDP1Q9NUW8 AL033523.1-201ENST00000605153 153 ntBASIC3.19□□□□□ -1.9
TDP1Q9NUW8 U2.1-201ENST00000618978 145 ntBASIC3.19□□□□□ -1.9
TDP1Q9NUW8 AL159153.1-201ENST00000619688 317 ntBASIC3.19□□□□□ -1.9
TDP1Q9NUW8 AC002064.3-201ENST00000623448 346 ntBASIC3.19□□□□□ -1.9
TDP1Q9NUW8 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.19□□□□□ -1.9
TDP1Q9NUW8 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
TDP1Q9NUW8 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
TDP1Q9NUW8 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.19□□□□□ -1.9
TDP1Q9NUW8 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.18□□□□□ -1.9
TDP1Q9NUW8 AC091564.4-201ENST00000533934 2194 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
TDP1Q9NUW8 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
TDP1Q9NUW8 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
TDP1Q9NUW8 AC092268.1-201ENST00000342691 405 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 SNORD115-32-201ENST00000364079 82 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 RNU6-450P-201ENST00000364654 107 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 CD24P4-201ENST00000382840 243 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 Y_RNA.424-201ENST00000384063 103 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 Y_RNA.500-201ENST00000384466 111 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 RNU6-1105P-201ENST00000384774 107 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 RNU6-823P-201ENST00000391042 103 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 SNORA26.3-201ENST00000391119 136 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 SAR1AP2-201ENST00000392696 594 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 Y_RNA.592-201ENST00000410274 109 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 AC138623.1-201ENST00000418060 216 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 AL358176.2-201ENST00000425769 204 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 AC010401.1-201ENST00000463867 348 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 AC087477.1-201ENST00000465747 340 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 AC006483.1-201ENST00000487308 313 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 RPL22P13-201ENST00000493291 347 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 Y_RNA.721-201ENST00000517207 102 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.18□□□□□ -1.9
TDP1Q9NUW8 AC113195.1-201ENST00000579952 141 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 VN1R91P-201ENST00000594377 169 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 AC096772.1-201ENST00000609146 564 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 AL132822.1-201ENST00000617063 513 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
TDP1Q9NUW8 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.18□□□□□ -1.9
TDP1Q9NUW8 AP000560.1-201ENST00000624150 1937 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 MTND5P27-201ENST00000428871 1720 ntBASIC3.18□□□□□ -1.9
TDP1Q9NUW8 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
TDP1Q9NUW8 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
TDP1Q9NUW8 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.17□□□□□ -1.9
TDP1Q9NUW8 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
TDP1Q9NUW8 MTND5P16-201ENST00000460269 1703 ntBASIC3.17□□□□□ -1.9
TDP1Q9NUW8 RNU6-1010P-201ENST00000362757 107 ntBASIC3.17□□□□□ -1.9
TDP1Q9NUW8 RNU6-529P-201ENST00000363383 104 ntBASIC3.17□□□□□ -1.9
TDP1Q9NUW8 U3.13-201ENST00000364804 214 ntBASIC3.17□□□□□ -1.9
TDP1Q9NUW8 MIR32-201ENST00000384965 70 ntBASIC3.17□□□□□ -1.9
TDP1Q9NUW8 EEF1A1P41-201ENST00000414667 207 ntBASIC3.17□□□□□ -1.9
TDP1Q9NUW8 CYCSP48-201ENST00000417124 323 ntBASIC3.17□□□□□ -1.9
TDP1Q9NUW8 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.17□□□□□ -1.9
TDP1Q9NUW8 MTND3P2-201ENST00000438452 342 ntBASIC3.17□□□□□ -1.9
TDP1Q9NUW8 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.17□□□□□ -1.9
TDP1Q9NUW8 OSTCP8-201ENST00000445117 448 ntBASIC3.17□□□□□ -1.9
TDP1Q9NUW8 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.17□□□□□ -1.9
TDP1Q9NUW8 RAC1P5-201ENST00000512182 576 ntBASIC3.17□□□□□ -1.9
TDP1Q9NUW8 AC021231.3-201ENST00000558497 370 ntBASIC3.17□□□□□ -1.9
TDP1Q9NUW8 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.17□□□□□ -1.9
TDP1Q9NUW8 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.17□□□□□ -1.9
TDP1Q9NUW8 RMST_6.1-201ENST00000611980 203 ntBASIC3.17□□□□□ -1.9
TDP1Q9NUW8 uc_338.14-201ENST00000613162 166 ntBASIC3.17□□□□□ -1.9
TDP1Q9NUW8 AL078596.1-201ENST00000624856 447 ntBASIC3.17□□□□□ -1.9
TDP1Q9NUW8 AC073476.4-201ENST00000628409 72 ntBASIC3.17□□□□□ -1.9
TDP1Q9NUW8 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.17□□□□□ -1.9
TDP1Q9NUW8 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
TDP1Q9NUW8 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
TDP1Q9NUW8 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.16□□□□□ -1.9
TDP1Q9NUW8 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
TDP1Q9NUW8 RNU6-212P-201ENST00000362642 104 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 Y_RNA.40-201ENST00000362645 93 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 SNORD114-19-201ENST00000363072 75 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 Y_RNA.106-201ENST00000363189 100 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 RNU6-1309P-201ENST00000363305 108 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 Y_RNA.133-201ENST00000363428 110 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 SNORA5B-201ENST00000363786 132 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 Y_RNA.358-201ENST00000365491 99 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 SNORD14.1-201ENST00000365609 90 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 RNU6-17P-201ENST00000384245 107 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 RNU6-18P-201ENST00000384527 107 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 MIR1289-1-201ENST00000408836 144 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 RNU6-101P-201ENST00000410323 104 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 AL590135.1-201ENST00000422215 156 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 AC019205.3-201ENST00000424573 156 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 AC016700.2-201ENST00000446011 156 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 RNU7-87P-201ENST00000459343 62 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 SNORA31.6-201ENST00000516241 130 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 SNORA31.16-201ENST00000516773 139 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 AC115990.1-201ENST00000526957 301 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.16□□□□□ -1.9
TDP1Q9NUW8 AL078605.1-201ENST00000603529 500 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 AC016727.2-201ENST00000603988 621 ntBASIC3.16□□□□□ -1.9
TDP1Q9NUW8 AC124312.5-201ENST00000604451 268 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms