Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RN7SKP61-201ENST00000410642 295 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 RNU6-1245P-201ENST00000411130 106 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 AC009161.1-201ENST00000417306 376 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 RPS15AP10-201ENST00000432472 382 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.03□□□□□ -2.08
LIME1Q9H400 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.03□□□□□ -2.08
LIME1Q9H400 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC2.03□□□□□ -2.08
LIME1Q9H400 RPL39P29-201ENST00000447779 157 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 CKS1BP2-201ENST00000497342 240 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 RNA5SP458-201ENST00000516188 119 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 RNU2-53P-201ENST00000516257 147 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 RNU6-1332P-201ENST00000516666 104 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 RNU6-256P-201ENST00000516747 97 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.03□□□□□ -2.08
LIME1Q9H400 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.03□□□□□ -2.08
LIME1Q9H400 AC104576.1-201ENST00000524225 88 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 AP000889.2-201ENST00000532684 490 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 AC093249.1-201ENST00000567049 203 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
LIME1Q9H400 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.03□□□□□ -2.08
LIME1Q9H400 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
LIME1Q9H400 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
LIME1Q9H400 RNA5SP125-201ENST00000364843 120 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 RNU6-1283P-201ENST00000365314 105 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 RNU6-214P-201ENST00000384130 107 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 SNORA67.3-201ENST00000384366 140 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 RNU6-831P-201ENST00000384548 107 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 SNORA64-201ENST00000384674 134 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 SNORA41-201ENST00000384675 132 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 MIR544A-201ENST00000384855 91 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.02□□□□□ -2.09
LIME1Q9H400 VN1R36P-201ENST00000414936 291 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 SUMO1P4-201ENST00000429430 302 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.02□□□□□ -2.09
LIME1Q9H400 USP9YP28-201ENST00000435142 589 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 AC124916.1-201ENST00000444020 547 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 AL031659.1-201ENST00000447075 539 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 RNU6-1037P-201ENST00000459571 107 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 RPS29P27-201ENST00000463711 170 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 RPL30P12-201ENST00000474666 353 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 RPL30P1-201ENST00000488676 339 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 MTCO2P30-201ENST00000503662 364 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.02□□□□□ -2.09
LIME1Q9H400 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.02□□□□□ -2.09
LIME1Q9H400 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.02□□□□□ -2.09
LIME1Q9H400 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.02□□□□□ -2.09
LIME1Q9H400 IMMP1LP2-201ENST00000552954 492 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 CPDP1-201ENST00000579660 283 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 MIR3672-201ENST00000584290 82 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 AC100810.6-201ENST00000638068 285 ntBASIC2.02□□□□□ -2.09
LIME1Q9H400 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
LIME1Q9H400 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
LIME1Q9H400 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
LIME1Q9H400 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
LIME1Q9H400 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.01□□□□□ -2.09
LIME1Q9H400 RNU6-212P-201ENST00000362642 104 ntBASIC2.01□□□□□ -2.09
LIME1Q9H400 Y_RNA.72-201ENST00000362894 103 ntBASIC2.01□□□□□ -2.09
LIME1Q9H400 Y_RNA.140-201ENST00000363474 103 ntBASIC2.01□□□□□ -2.09
LIME1Q9H400 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
LIME1Q9H400 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
LIME1Q9H400 MTCO3P46-201ENST00000425787 232 ntBASIC2.01□□□□□ -2.09
LIME1Q9H400 AL645568.3-201ENST00000433683 316 ntBASIC2.01□□□□□ -2.09
LIME1Q9H400 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.01□□□□□ -2.09
LIME1Q9H400 USP9YP8-201ENST00000441913 500 ntBASIC2.01□□□□□ -2.09
LIME1Q9H400 AF213884.2-201ENST00000510417 903 ntBASIC2.01□□□□□ -2.09
LIME1Q9H400 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.01□□□□□ -2.09
LIME1Q9H400 SNORA48.11-201ENST00000517015 89 ntBASIC2.01□□□□□ -2.09
LIME1Q9H400 RN7SKP256-201ENST00000517201 314 ntBASIC2.01□□□□□ -2.09
LIME1Q9H400 AC115990.1-201ENST00000526957 301 ntBASIC2.01□□□□□ -2.09
LIME1Q9H400 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.01□□□□□ -2.09
LIME1Q9H400 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC2.01□□□□□ -2.09
LIME1Q9H400 MIR3942-201ENST00000585264 109 ntBASIC2.01□□□□□ -2.09
LIME1Q9H400 RPL30P11-203ENST00000598995 310 ntBASIC2.01□□□□□ -2.09
LIME1Q9H400 AL138963.2-201ENST00000605137 226 ntBASIC2.01□□□□□ -2.09
LIME1Q9H400 AC067747.1-201ENST00000608026 250 ntBASIC2.01□□□□□ -2.09
LIME1Q9H400 HMGB1P24-202ENST00000615653 685 ntBASIC2.01□□□□□ -2.09
LIME1Q9H400 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.01□□□□□ -2.09
LIME1Q9H400 Y_RNA.86-201ENST00000363020 111 ntBASIC2□□□□□ -2.09
LIME1Q9H400 RNU1-138P-201ENST00000384093 164 ntBASIC2□□□□□ -2.09
LIME1Q9H400 RNU6-1106P-201ENST00000390845 107 ntBASIC2□□□□□ -2.09
LIME1Q9H400 AL356776.1-201ENST00000406574 447 ntBASIC2□□□□□ -2.09
LIME1Q9H400 AL030996.1-201ENST00000411430 235 ntBASIC2□□□□□ -2.09
LIME1Q9H400 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2□□□□□ -2.09
LIME1Q9H400 AL133396.1-201ENST00000432048 687 ntBASIC2□□□□□ -2.09
LIME1Q9H400 RNU7-26P-201ENST00000458980 63 ntBASIC2□□□□□ -2.09
LIME1Q9H400 AC073901.1-201ENST00000462471 408 ntBASIC2□□□□□ -2.09
LIME1Q9H400 AC140059.1-201ENST00000489238 361 ntBASIC2□□□□□ -2.09
LIME1Q9H400 MTCO1P29-201ENST00000496868 288 ntBASIC2□□□□□ -2.09
LIME1Q9H400 RPL39P5-202ENST00000512505 151 ntBASIC2□□□□□ -2.09
LIME1Q9H400 SNORA31.11-201ENST00000516528 139 ntBASIC2□□□□□ -2.09
LIME1Q9H400 RNU6-612P-201ENST00000516909 102 ntBASIC2□□□□□ -2.09
LIME1Q9H400 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2□□□□□ -2.09
LIME1Q9H400 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC2□□□□□ -2.09
LIME1Q9H400 AC107953.1-201ENST00000522216 297 ntBASIC2□□□□□ -2.09
LIME1Q9H400 AC026371.1-201ENST00000551867 419 ntBASIC2□□□□□ -2.09
LIME1Q9H400 AC026464.5-201ENST00000562497 722 ntBASIC2□□□□□ -2.09
LIME1Q9H400 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2□□□□□ -2.09
LIME1Q9H400 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms