Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.53□□□□□ -1.84
USP53Q70EK8 U3.44-201ENST00000458938 192 ntBASIC3.53□□□□□ -1.84
USP53Q70EK8 snoU13.14-201ENST00000459372 104 ntBASIC3.53□□□□□ -1.84
USP53Q70EK8 RNU5F-2P-201ENST00000516066 82 ntBASIC3.53□□□□□ -1.84
USP53Q70EK8 RNU6-1023P-201ENST00000516137 106 ntBASIC3.53□□□□□ -1.84
USP53Q70EK8 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.53□□□□□ -1.84
USP53Q70EK8 MIR3186-201ENST00000577404 85 ntBASIC3.53□□□□□ -1.84
USP53Q70EK8 MIR3128-201ENST00000581957 66 ntBASIC3.53□□□□□ -1.84
USP53Q70EK8 AL137843.1-201ENST00000605078 385 ntBASIC3.53□□□□□ -1.84
USP53Q70EK8 MIR8058-201ENST00000615737 89 ntBASIC3.53□□□□□ -1.84
USP53Q70EK8 U6.98-201ENST00000637157 84 ntBASIC3.53□□□□□ -1.84
USP53Q70EK8 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.53□□□□□ -1.84
USP53Q70EK8 MTND5P6-201ENST00000422338 1798 ntBASIC3.53□□□□□ -1.84
USP53Q70EK8 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
USP53Q70EK8 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
USP53Q70EK8 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
USP53Q70EK8 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
USP53Q70EK8 AL365361.1-201ENST00000566942 3481 ntBASIC3.52□□□□□ -1.85
USP53Q70EK8 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.52□□□□□ -1.85
USP53Q70EK8 MIR335-201ENST00000362173 94 ntBASIC3.52□□□□□ -1.85
USP53Q70EK8 SNORD81.1-201ENST00000363064 77 ntBASIC3.52□□□□□ -1.85
USP53Q70EK8 SNORD114-19-201ENST00000363072 75 ntBASIC3.52□□□□□ -1.85
USP53Q70EK8 RNU6-280P-201ENST00000364145 104 ntBASIC3.52□□□□□ -1.85
USP53Q70EK8 SNORA48.2-201ENST00000390926 124 ntBASIC3.52□□□□□ -1.85
USP53Q70EK8 Y_RNA.581-201ENST00000391017 97 ntBASIC3.52□□□□□ -1.85
USP53Q70EK8 SNORD12B-201ENST00000410433 91 ntBASIC3.52□□□□□ -1.85
USP53Q70EK8 RNU6-1001P-201ENST00000411265 100 ntBASIC3.52□□□□□ -1.85
USP53Q70EK8 HMGN2P20-201ENST00000437531 273 ntBASIC3.52□□□□□ -1.85
USP53Q70EK8 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.52□□□□□ -1.85
USP53Q70EK8 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.52□□□□□ -1.85
USP53Q70EK8 RN7SL93P-201ENST00000463035 293 ntBASIC3.52□□□□□ -1.85
USP53Q70EK8 GZMAP1-201ENST00000503054 631 ntBASIC3.52□□□□□ -1.85
USP53Q70EK8 HMGB1P35-201ENST00000503360 598 ntBASIC3.52□□□□□ -1.85
USP53Q70EK8 SNORA70.18-201ENST00000516696 98 ntBASIC3.52□□□□□ -1.85
USP53Q70EK8 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.52□□□□□ -1.85
USP53Q70EK8 CYP4A27P-201ENST00000567218 190 ntBASIC3.52□□□□□ -1.85
USP53Q70EK8 AC005520.5-201ENST00000613926 164 ntBASIC3.52□□□□□ -1.85
USP53Q70EK8 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.52□□□□□ -1.85
USP53Q70EK8 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
USP53Q70EK8 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
USP53Q70EK8 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.51□□□□□ -1.85
USP53Q70EK8 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
USP53Q70EK8 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
USP53Q70EK8 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
USP53Q70EK8 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
USP53Q70EK8 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
USP53Q70EK8 Y_RNA.40-201ENST00000362645 93 ntBASIC3.51□□□□□ -1.85
USP53Q70EK8 RNU6-529P-201ENST00000363383 104 ntBASIC3.51□□□□□ -1.85
USP53Q70EK8 SNORA38.1-201ENST00000364172 131 ntBASIC3.51□□□□□ -1.85
USP53Q70EK8 RNU6-926P-201ENST00000384075 107 ntBASIC3.51□□□□□ -1.85
USP53Q70EK8 MIR329-1-201ENST00000385028 80 ntBASIC3.51□□□□□ -1.85
USP53Q70EK8 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
USP53Q70EK8 AC138623.1-201ENST00000418060 216 ntBASIC3.51□□□□□ -1.85
USP53Q70EK8 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.51□□□□□ -1.85
USP53Q70EK8 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.51□□□□□ -1.85
USP53Q70EK8 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.51□□□□□ -1.85
USP53Q70EK8 AC007215.1-201ENST00000464893 276 ntBASIC3.51□□□□□ -1.85
USP53Q70EK8 RN7SL807P-201ENST00000470923 297 ntBASIC3.51□□□□□ -1.85
USP53Q70EK8 RPS23P5-201ENST00000495419 428 ntBASIC3.51□□□□□ -1.85
USP53Q70EK8 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.51□□□□□ -1.85
USP53Q70EK8 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.51□□□□□ -1.85
USP53Q70EK8 AC012433.1-201ENST00000588916 398 ntBASIC3.51□□□□□ -1.85
USP53Q70EK8 AC078938.1-201ENST00000620993 318 ntBASIC3.51□□□□□ -1.85
USP53Q70EK8 AP000553.6-201ENST00000641242 118 ntBASIC3.51□□□□□ -1.85
USP53Q70EK8 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.85
USP53Q70EK8 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.5□□□□□ -1.85
USP53Q70EK8 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
USP53Q70EK8 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.5□□□□□ -1.85
USP53Q70EK8 Y_RNA.60-201ENST00000362831 98 ntBASIC3.5□□□□□ -1.85
USP53Q70EK8 RNU4-56P-201ENST00000364700 142 ntBASIC3.5□□□□□ -1.85
USP53Q70EK8 SNORA14A-201ENST00000364773 135 ntBASIC3.5□□□□□ -1.85
USP53Q70EK8 RNU6-1145P-201ENST00000384246 107 ntBASIC3.5□□□□□ -1.85
USP53Q70EK8 SNORD63-201ENST00000384262 68 ntBASIC3.5□□□□□ -1.85
USP53Q70EK8 RNU6-937P-201ENST00000384325 106 ntBASIC3.5□□□□□ -1.85
USP53Q70EK8 Y_RNA.478-201ENST00000384358 107 ntBASIC3.5□□□□□ -1.85
USP53Q70EK8 RNU6-1026P-201ENST00000384465 108 ntBASIC3.5□□□□□ -1.85
USP53Q70EK8 Y_RNA.552-201ENST00000384665 112 ntBASIC3.5□□□□□ -1.85
USP53Q70EK8 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.5□□□□□ -1.85
USP53Q70EK8 AIMP1P2-201ENST00000425294 312 ntBASIC3.5□□□□□ -1.85
USP53Q70EK8 ARF4P2-201ENST00000430209 526 ntBASIC3.5□□□□□ -1.85
USP53Q70EK8 AL445305.1-201ENST00000432577 575 ntBASIC3.5□□□□□ -1.85
USP53Q70EK8 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.5□□□□□ -1.85
USP53Q70EK8 AP001324.2-201ENST00000461163 319 ntBASIC3.5□□□□□ -1.85
USP53Q70EK8 RN7SL330P-201ENST00000469709 307 ntBASIC3.5□□□□□ -1.85
USP53Q70EK8 RPL26P26-201ENST00000480251 434 ntBASIC3.5□□□□□ -1.85
USP53Q70EK8 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC3.5□□□□□ -1.85
USP53Q70EK8 AC107222.1-201ENST00000510899 637 ntBASIC3.5□□□□□ -1.85
USP53Q70EK8 SNORA31.6-201ENST00000516241 130 ntBASIC3.5□□□□□ -1.85
USP53Q70EK8 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.5□□□□□ -1.85
USP53Q70EK8 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.5□□□□□ -1.85
USP53Q70EK8 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
USP53Q70EK8 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP53Q70EK8 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
USP53Q70EK8 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP53Q70EK8 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.5□□□□□ -1.85
USP53Q70EK8 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP53Q70EK8 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
USP53Q70EK8 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
USP53Q70EK8 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.49□□□□□ -1.85
USP53Q70EK8 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 172.6 ms