Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.29□□□□□ -1.88
MSX2P35548 HMGN2P30-201ENST00000423237 256 ntBASIC3.29□□□□□ -1.88
MSX2P35548 RPL23AP82-202ENST00000427528 469 ntBASIC3.29□□□□□ -1.88
MSX2P35548 AC010099.1-201ENST00000455434 375 ntBASIC3.29□□□□□ -1.88
MSX2P35548 CENPBD1P1-201ENST00000464061 469 ntBASIC3.29□□□□□ -1.88
MSX2P35548 AC097462.2-201ENST00000504623 481 ntBASIC3.29□□□□□ -1.88
MSX2P35548 SNORA67.7-201ENST00000516664 135 ntBASIC3.29□□□□□ -1.88
MSX2P35548 SNORA70.18-201ENST00000516696 98 ntBASIC3.29□□□□□ -1.88
MSX2P35548 RNU6-255P-201ENST00000516957 105 ntBASIC3.29□□□□□ -1.88
MSX2P35548 AC016256.1-201ENST00000547971 354 ntBASIC3.29□□□□□ -1.88
MSX2P35548 CR383656.8-201ENST00000549046 145 ntBASIC3.29□□□□□ -1.88
MSX2P35548 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.29□□□□□ -1.88
MSX2P35548 AC087499.8-201ENST00000578406 226 ntBASIC3.29□□□□□ -1.88
MSX2P35548 SNORD113-5-201ENST00000607261 78 ntBASIC3.29□□□□□ -1.88
MSX2P35548 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.29□□□□□ -1.88
MSX2P35548 AC024581.2-201ENST00000619986 252 ntBASIC3.29□□□□□ -1.88
MSX2P35548 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC3.29□□□□□ -1.88
MSX2P35548 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.29□□□□□ -1.88
MSX2P35548 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
MSX2P35548 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
MSX2P35548 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
MSX2P35548 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
MSX2P35548 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
MSX2P35548 SNORA14A-201ENST00000364773 135 ntBASIC3.28□□□□□ -1.88
MSX2P35548 SNORA73.2-201ENST00000364946 201 ntBASIC3.28□□□□□ -1.88
MSX2P35548 RNU6-326P-201ENST00000365480 107 ntBASIC3.28□□□□□ -1.88
MSX2P35548 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
MSX2P35548 RNU6-662P-201ENST00000384253 104 ntBASIC3.28□□□□□ -1.88
MSX2P35548 MIR487A-201ENST00000385009 80 ntBASIC3.28□□□□□ -1.88
MSX2P35548 AL033519.2-201ENST00000403958 392 ntBASIC3.28□□□□□ -1.88
MSX2P35548 RNU4-30P-201ENST00000410245 143 ntBASIC3.28□□□□□ -1.88
MSX2P35548 RNA5SP293-201ENST00000410527 113 ntBASIC3.28□□□□□ -1.88
MSX2P35548 AC126124.2-201ENST00000413542 321 ntBASIC3.28□□□□□ -1.88
MSX2P35548 AC074117.2-201ENST00000417130 397 ntBASIC3.28□□□□□ -1.88
MSX2P35548 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC3.28□□□□□ -1.88
MSX2P35548 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.28□□□□□ -1.88
MSX2P35548 RPL37P4-201ENST00000448908 268 ntBASIC3.28□□□□□ -1.88
MSX2P35548 AC073901.1-201ENST00000462471 408 ntBASIC3.28□□□□□ -1.88
MSX2P35548 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.28□□□□□ -1.88
MSX2P35548 SEPT14P8-201ENST00000508026 178 ntBASIC3.28□□□□□ -1.88
MSX2P35548 AC107393.1-201ENST00000512403 346 ntBASIC3.28□□□□□ -1.88
MSX2P35548 RN7SKP49-201ENST00000516675 260 ntBASIC3.28□□□□□ -1.88
MSX2P35548 SNORD59.2-201ENST00000516873 68 ntBASIC3.28□□□□□ -1.88
MSX2P35548 AC093331.1-201ENST00000521474 169 ntBASIC3.28□□□□□ -1.88
MSX2P35548 AP000867.2-201ENST00000532468 320 ntBASIC3.28□□□□□ -1.88
MSX2P35548 AK6P2-201ENST00000549020 471 ntBASIC3.28□□□□□ -1.88
MSX2P35548 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.28□□□□□ -1.88
MSX2P35548 MIR5571-201ENST00000577998 113 ntBASIC3.28□□□□□ -1.88
MSX2P35548 AL356157.2-201ENST00000605122 111 ntBASIC3.28□□□□□ -1.88
MSX2P35548 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.28□□□□□ -1.88
MSX2P35548 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.27□□□□□ -1.89
MSX2P35548 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.27□□□□□ -1.89
MSX2P35548 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
MSX2P35548 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.27□□□□□ -1.89
MSX2P35548 SNORD56.1-201ENST00000362913 68 ntBASIC3.27□□□□□ -1.89
MSX2P35548 RNU6-884P-201ENST00000363889 107 ntBASIC3.27□□□□□ -1.89
MSX2P35548 RNU1-140P-201ENST00000365040 165 ntBASIC3.27□□□□□ -1.89
MSX2P35548 RNY4P28-201ENST00000365281 93 ntBASIC3.27□□□□□ -1.89
MSX2P35548 RNU6-805P-201ENST00000365643 106 ntBASIC3.27□□□□□ -1.89
MSX2P35548 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
MSX2P35548 RNU6-281P-201ENST00000384212 103 ntBASIC3.27□□□□□ -1.89
MSX2P35548 SNORA19-201ENST00000384737 128 ntBASIC3.27□□□□□ -1.89
MSX2P35548 MIR888-201ENST00000401186 77 ntBASIC3.27□□□□□ -1.89
MSX2P35548 FTH1P15-201ENST00000406984 280 ntBASIC3.27□□□□□ -1.89
MSX2P35548 RNU6-1245P-201ENST00000411130 106 ntBASIC3.27□□□□□ -1.89
MSX2P35548 AC245291.1-201ENST00000419501 328 ntBASIC3.27□□□□□ -1.89
MSX2P35548 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.27□□□□□ -1.89
MSX2P35548 snoU13.28-201ENST00000459235 104 ntBASIC3.27□□□□□ -1.89
MSX2P35548 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.27□□□□□ -1.89
MSX2P35548 RNU2-31P-201ENST00000516954 155 ntBASIC3.27□□□□□ -1.89
MSX2P35548 AC107934.2-201ENST00000518653 310 ntBASIC3.27□□□□□ -1.89
MSX2P35548 AC068657.1-201ENST00000520807 306 ntBASIC3.27□□□□□ -1.89
MSX2P35548 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.27□□□□□ -1.89
MSX2P35548 AP002392.1-201ENST00000537692 208 ntBASIC3.27□□□□□ -1.89
MSX2P35548 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.27□□□□□ -1.89
MSX2P35548 UBL5P4-201ENST00000562584 236 ntBASIC3.27□□□□□ -1.89
MSX2P35548 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.27□□□□□ -1.89
MSX2P35548 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.27□□□□□ -1.89
MSX2P35548 AC011921.3-201ENST00000605540 361 ntBASIC3.27□□□□□ -1.89
MSX2P35548 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.27□□□□□ -1.89
MSX2P35548 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
MSX2P35548 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
MSX2P35548 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.27□□□□□ -1.89
MSX2P35548 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
MSX2P35548 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.27□□□□□ -1.89
MSX2P35548 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
MSX2P35548 RNU6-682P-201ENST00000363843 106 ntBASIC3.26□□□□□ -1.89
MSX2P35548 RNU6-740P-201ENST00000364734 105 ntBASIC3.26□□□□□ -1.89
MSX2P35548 Y_RNA.319-201ENST00000365138 92 ntBASIC3.26□□□□□ -1.89
MSX2P35548 RNU6-378P-201ENST00000384324 107 ntBASIC3.26□□□□□ -1.89
MSX2P35548 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
MSX2P35548 RNU6-159P-201ENST00000391080 106 ntBASIC3.26□□□□□ -1.89
MSX2P35548 SNORA53-201ENST00000391141 249 ntBASIC3.26□□□□□ -1.89
MSX2P35548 SNORA48.8-201ENST00000391324 134 ntBASIC3.26□□□□□ -1.89
MSX2P35548 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.26□□□□□ -1.89
MSX2P35548 RNU5A-5P-201ENST00000411054 116 ntBASIC3.26□□□□□ -1.89
MSX2P35548 RNU6-1001P-201ENST00000411265 100 ntBASIC3.26□□□□□ -1.89
MSX2P35548 Y_RNA.626-201ENST00000411288 95 ntBASIC3.26□□□□□ -1.89
MSX2P35548 CYCSP19-201ENST00000411715 316 ntBASIC3.26□□□□□ -1.89
MSX2P35548 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 131.8 ms