Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 AC012640.5-201ENST00000623897 319 ntBASIC2.41□□□□□ -2.02
HOXD13P35453 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
HOXD13P35453 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
HOXD13P35453 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.4□□□□□ -2.02
HOXD13P35453 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.4□□□□□ -2.03
HOXD13P35453 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
HOXD13P35453 Y_RNA.256-201ENST00000364594 104 ntBASIC2.4□□□□□ -2.03
HOXD13P35453 Y_RNA.453-201ENST00000384223 109 ntBASIC2.4□□□□□ -2.03
HOXD13P35453 Y_RNA.500-201ENST00000384466 111 ntBASIC2.4□□□□□ -2.03
HOXD13P35453 RNA5SP118-201ENST00000410385 109 ntBASIC2.4□□□□□ -2.03
HOXD13P35453 ZNF885P-201ENST00000420174 1098 ntBASIC2.4□□□□□ -2.03
HOXD13P35453 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.4□□□□□ -2.03
HOXD13P35453 AC007547.1-201ENST00000462177 490 ntBASIC2.4□□□□□ -2.03
HOXD13P35453 HMGN2P26-201ENST00000463169 339 ntBASIC2.4□□□□□ -2.03
HOXD13P35453 AC107032.1-201ENST00000485945 480 ntBASIC2.4□□□□□ -2.03
HOXD13P35453 AC092436.3-201ENST00000511788 257 ntBASIC2.4□□□□□ -2.03
HOXD13P35453 AC008549.1-201ENST00000512900 643 ntBASIC2.4□□□□□ -2.03
HOXD13P35453 Y_RNA.665-201ENST00000516177 98 ntBASIC2.4□□□□□ -2.03
HOXD13P35453 AC107953.1-201ENST00000522216 297 ntBASIC2.4□□□□□ -2.03
HOXD13P35453 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.4□□□□□ -2.03
HOXD13P35453 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.4□□□□□ -2.03
HOXD13P35453 AC016256.1-201ENST00000547971 354 ntBASIC2.4□□□□□ -2.03
HOXD13P35453 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.4□□□□□ -2.03
HOXD13P35453 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
HOXD13P35453 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
HOXD13P35453 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.39□□□□□ -2.03
HOXD13P35453 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
HOXD13P35453 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
HOXD13P35453 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.39□□□□□ -2.03
HOXD13P35453 RNU4-15P-201ENST00000362613 141 ntBASIC2.39□□□□□ -2.03
HOXD13P35453 RNU6-254P-201ENST00000363377 107 ntBASIC2.39□□□□□ -2.03
HOXD13P35453 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
HOXD13P35453 MIR29C-201ENST00000385231 88 ntBASIC2.39□□□□□ -2.03
HOXD13P35453 RNU6-332P-201ENST00000391193 108 ntBASIC2.39□□□□□ -2.03
HOXD13P35453 MTCYBP2-201ENST00000407745 171 ntBASIC2.39□□□□□ -2.03
HOXD13P35453 SNORA3.2-201ENST00000408221 125 ntBASIC2.39□□□□□ -2.03
HOXD13P35453 SRIP3-201ENST00000413200 219 ntBASIC2.39□□□□□ -2.03
HOXD13P35453 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXD13P35453 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXD13P35453 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.39□□□□□ -2.03
HOXD13P35453 RNA5SP200-201ENST00000516360 103 ntBASIC2.39□□□□□ -2.03
HOXD13P35453 RNU6-965P-201ENST00000516721 96 ntBASIC2.39□□□□□ -2.03
HOXD13P35453 SNRPGP18-201ENST00000553000 214 ntBASIC2.39□□□□□ -2.03
HOXD13P35453 SNORD53-201ENST00000579969 78 ntBASIC2.39□□□□□ -2.03
HOXD13P35453 AC090517.2-201ENST00000614966 680 ntBASIC2.39□□□□□ -2.03
HOXD13P35453 AL132822.1-201ENST00000617063 513 ntBASIC2.39□□□□□ -2.03
HOXD13P35453 AC024614.3-201ENST00000637860 256 ntBASIC2.39□□□□□ -2.03
HOXD13P35453 AC005336.3-201ENST00000623833 2679 ntBASIC2.39□□□□□ -2.03
HOXD13P35453 U3.9-201ENST00000363823 204 ntBASIC2.38□□□□□ -2.03
HOXD13P35453 SNORA6-201ENST00000384033 151 ntBASIC2.38□□□□□ -2.03
HOXD13P35453 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
HOXD13P35453 AL023284.1-201ENST00000403956 276 ntBASIC2.38□□□□□ -2.03
HOXD13P35453 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.38□□□□□ -2.03
HOXD13P35453 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXD13P35453 AL645568.3-201ENST00000433683 316 ntBASIC2.38□□□□□ -2.03
HOXD13P35453 AMD1P1-201ENST00000457220 922 ntBASIC2.38□□□□□ -2.03
HOXD13P35453 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXD13P35453 AC096745.1-201ENST00000509945 370 ntBASIC2.38□□□□□ -2.03
HOXD13P35453 SNORA31.16-201ENST00000516773 139 ntBASIC2.38□□□□□ -2.03
HOXD13P35453 HSPE1P18-201ENST00000517602 280 ntBASIC2.38□□□□□ -2.03
HOXD13P35453 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXD13P35453 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.38□□□□□ -2.03
HOXD13P35453 CYP4A27P-201ENST00000567218 190 ntBASIC2.38□□□□□ -2.03
HOXD13P35453 AC007229.1-201ENST00000590455 412 ntBASIC2.38□□□□□ -2.03
HOXD13P35453 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.38□□□□□ -2.03
HOXD13P35453 FAM157A-202ENST00000615155 405 ntBASIC2.38□□□□□ -2.03
HOXD13P35453 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.38□□□□□ -2.03
HOXD13P35453 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
HOXD13P35453 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
HOXD13P35453 Y_RNA.89-201ENST00000363031 102 ntBASIC2.37□□□□□ -2.03
HOXD13P35453 RNU6-1317P-201ENST00000364582 104 ntBASIC2.37□□□□□ -2.03
HOXD13P35453 Y_RNA.295-201ENST00000364918 102 ntBASIC2.37□□□□□ -2.03
HOXD13P35453 SNORA46.1-201ENST00000391069 153 ntBASIC2.37□□□□□ -2.03
HOXD13P35453 RNU2-48P-201ENST00000410694 191 ntBASIC2.37□□□□□ -2.03
HOXD13P35453 Z98742.3-201ENST00000418637 326 ntBASIC2.37□□□□□ -2.03
HOXD13P35453 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.37□□□□□ -2.03
HOXD13P35453 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.37□□□□□ -2.03
HOXD13P35453 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.37□□□□□ -2.03
HOXD13P35453 AC008413.1-201ENST00000511864 177 ntBASIC2.37□□□□□ -2.03
HOXD13P35453 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.37□□□□□ -2.03
HOXD13P35453 SCARNA16.3-201ENST00000516595 184 ntBASIC2.37□□□□□ -2.03
HOXD13P35453 AC026464.5-201ENST00000562497 722 ntBASIC2.37□□□□□ -2.03
HOXD13P35453 AC233702.2-202ENST00000562547 291 ntBASIC2.37□□□□□ -2.03
HOXD13P35453 AC068790.6-201ENST00000602558 258 ntBASIC2.37□□□□□ -2.03
HOXD13P35453 AC078795.3-201ENST00000602913 472 ntBASIC2.37□□□□□ -2.03
HOXD13P35453 Z98751.3-201ENST00000604447 521 ntBASIC2.37□□□□□ -2.03
HOXD13P35453 AC068944.2-201ENST00000610373 403 ntBASIC2.37□□□□□ -2.03
HOXD13P35453 MIR6895-201ENST00000613497 78 ntBASIC2.37□□□□□ -2.03
HOXD13P35453 AL590808.1-201ENST00000618696 141 ntBASIC2.37□□□□□ -2.03
HOXD13P35453 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.37□□□□□ -2.03
HOXD13P35453 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.37□□□□□ -2.03
HOXD13P35453 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
HOXD13P35453 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.37□□□□□ -2.03
HOXD13P35453 AC233981.2-201ENST00000611524 1614 ntBASIC2.36□□□□□ -2.03
HOXD13P35453 SNORD32B-201ENST00000364460 84 ntBASIC2.36□□□□□ -2.03
HOXD13P35453 RNU6-26P-201ENST00000383985 107 ntBASIC2.36□□□□□ -2.03
HOXD13P35453 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
HOXD13P35453 HMGN2P39-201ENST00000398005 273 ntBASIC2.36□□□□□ -2.03
HOXD13P35453 AL357139.1-201ENST00000407792 426 ntBASIC2.36□□□□□ -2.03
HOXD13P35453 MTND3P9-201ENST00000429526 346 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms