Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 RNY3P15-201ENST00000516297 97 ntBASIC3.3□□□□□ -1.88
CDKL5O76039 SNORA9.3-201ENST00000516383 129 ntBASIC3.3□□□□□ -1.88
CDKL5O76039 AC109329.1-201ENST00000518744 317 ntBASIC3.3□□□□□ -1.88
CDKL5O76039 CASP1P1-201ENST00000526345 212 ntBASIC3.3□□□□□ -1.88
CDKL5O76039 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.3□□□□□ -1.88
CDKL5O76039 AC023157.2-201ENST00000540596 141 ntBASIC3.3□□□□□ -1.88
CDKL5O76039 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.3□□□□□ -1.88
CDKL5O76039 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.3□□□□□ -1.88
CDKL5O76039 MIR4782-201ENST00000577987 79 ntBASIC3.3□□□□□ -1.88
CDKL5O76039 AC024153.1-201ENST00000603103 365 ntBASIC3.3□□□□□ -1.88
CDKL5O76039 AL442067.1-201ENST00000613261 223 ntBASIC3.3□□□□□ -1.88
CDKL5O76039 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.3□□□□□ -1.88
CDKL5O76039 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.3□□□□□ -1.88
CDKL5O76039 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.3□□□□□ -1.88
CDKL5O76039 MIR26A1-201ENST00000362205 77 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 Y_RNA.64-201ENST00000362845 102 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 RNU6-227P-201ENST00000362865 103 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 Y_RNA.123-201ENST00000363338 102 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 RNU4-50P-201ENST00000364361 141 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 Y_RNA.447-201ENST00000384184 113 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 Y_RNA.483-201ENST00000384380 101 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 MIR628-201ENST00000385229 95 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 RNU6-847P-201ENST00000411115 108 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 FCF1P4-201ENST00000448326 183 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.29□□□□□ -1.88
CDKL5O76039 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.29□□□□□ -1.88
CDKL5O76039 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.29□□□□□ -1.88
CDKL5O76039 RNU2-53P-201ENST00000516257 147 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 RNU6-911P-201ENST00000516523 104 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 RNU6-703P-201ENST00000516946 107 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 RNU6-1183P-201ENST00000517054 60 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.29□□□□□ -1.88
CDKL5O76039 AC022080.3-201ENST00000544433 482 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 MIR3605-201ENST00000583214 100 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 AC006111.3-201ENST00000622137 383 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 AC027309.3-201ENST00000623419 351 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 AC009487.2-201ENST00000420969 6821 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 AP000560.1-201ENST00000624150 1937 ntBASIC3.29□□□□□ -1.88
CDKL5O76039 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.28□□□□□ -1.88
CDKL5O76039 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CDKL5O76039 AC092593.1-201ENST00000515413 1815 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.28□□□□□ -1.88
CDKL5O76039 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.88
CDKL5O76039 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CDKL5O76039 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.28□□□□□ -1.88
CDKL5O76039 Y_RNA.288-201ENST00000364854 92 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 RNU6-217P-201ENST00000384164 104 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 Y_RNA.526-201ENST00000384572 110 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 MIR483-201ENST00000385070 76 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 SNORD88.1-201ENST00000408684 91 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.28□□□□□ -1.88
CDKL5O76039 EEF1A1P41-201ENST00000414667 207 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.28□□□□□ -1.88
CDKL5O76039 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.28□□□□□ -1.88
CDKL5O76039 RPL39P40-201ENST00000445481 146 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 RPL30P5-201ENST00000494923 336 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 AC107222.1-201ENST00000510899 637 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 Y_RNA.680-201ENST00000516441 93 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 SNORA31.18-201ENST00000517043 134 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 RNU6-897P-201ENST00000517135 105 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 AL590705.4-201ENST00000532209 134 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 HSPE1P20-201ENST00000538133 289 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC3.28□□□□□ -1.88
CDKL5O76039 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.28□□□□□ -1.88
CDKL5O76039 AC005357.1-201ENST00000588399 301 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 AL390123.1-201ENST00000603216 237 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 AC008962.1-201ENST00000605729 304 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 AC093732.2-201ENST00000607950 274 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 FTX_3.1-201ENST00000610451 147 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 AL359198.2-201ENST00000611836 194 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 SCARNA4-202ENST00000625402 129 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 U2.21-201ENST00000637295 81 ntBASIC3.28□□□□□ -1.88
CDKL5O76039 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.28□□□□□ -1.88
CDKL5O76039 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CDKL5O76039 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CDKL5O76039 RNU6-105P-201ENST00000363909 104 ntBASIC3.27□□□□□ -1.89
CDKL5O76039 RNU6-898P-201ENST00000365627 104 ntBASIC3.27□□□□□ -1.89
CDKL5O76039 Y_RNA.376-201ENST00000365638 108 ntBASIC3.27□□□□□ -1.89
CDKL5O76039 RNU6-1026P-201ENST00000384465 108 ntBASIC3.27□□□□□ -1.89
CDKL5O76039 RNU6-658P-201ENST00000384606 106 ntBASIC3.27□□□□□ -1.89
CDKL5O76039 RNU6-130P-201ENST00000411112 103 ntBASIC3.27□□□□□ -1.89
CDKL5O76039 ARL5AP4-201ENST00000430731 512 ntBASIC3.27□□□□□ -1.89
CDKL5O76039 AL139132.1-201ENST00000431587 344 ntBASIC3.27□□□□□ -1.89
CDKL5O76039 AC003982.1-202ENST00000469928 248 ntBASIC3.27□□□□□ -1.89
CDKL5O76039 RNU6-1143P-201ENST00000516125 104 ntBASIC3.27□□□□□ -1.89
CDKL5O76039 RNU1-103P-201ENST00000516502 125 ntBASIC3.27□□□□□ -1.89
CDKL5O76039 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.27□□□□□ -1.89
CDKL5O76039 ZNF861P-201ENST00000588126 639 ntBASIC3.27□□□□□ -1.89
CDKL5O76039 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.27□□□□□ -1.89
CDKL5O76039 AC011373.1-201ENST00000607270 237 ntBASIC3.27□□□□□ -1.89
CDKL5O76039 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.27□□□□□ -1.89
CDKL5O76039 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.27□□□□□ -1.89
CDKL5O76039 AC097372.5-201ENST00000623665 376 ntBASIC3.27□□□□□ -1.89
CDKL5O76039 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.27□□□□□ -1.89
CDKL5O76039 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.26□□□□□ -1.89
CDKL5O76039 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CDKL5O76039 Y_RNA.19-201ENST00000362462 99 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms