Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXA3O43365 MTND5P35-201ENST00000557537 1720 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 MIR5187-201ENST00000583479 76 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXA3O43365 AL137843.1-201ENST00000605078 385 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 U3.45-201ENST00000607547 219 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 AC012531.5-201ENST00000611375 151 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 AC005520.5-201ENST00000613926 164 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXA3O43365 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
HOXA3O43365 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.06□□□□□ -1.92
HOXA3O43365 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXA3O43365 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXA3O43365 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.05□□□□□ -1.92
HOXA3O43365 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXA3O43365 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXA3O43365 Y_RNA.117-201ENST00000363294 101 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 RNU6-799P-201ENST00000363567 107 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 Y_RNA.230-201ENST00000364348 109 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 Y_RNA.274-201ENST00000364714 101 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 Y_RNA.297-201ENST00000364950 91 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 RNU6-1175P-201ENST00000365200 107 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 MIR199A2-201ENST00000385289 110 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
HOXA3O43365 CBX3P9-201ENST00000402326 552 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXA3O43365 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXA3O43365 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.05□□□□□ -1.92
HOXA3O43365 AL031183.1-201ENST00000457667 207 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 AC110768.1-201ENST00000509222 400 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 Y_RNA.683-201ENST00000516508 93 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 SNORA31.21-201ENST00000517180 77 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 CYCSP23-201ENST00000519781 313 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 RRN3P3-201ENST00000549207 578 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 AC233702.2-202ENST00000562547 291 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXA3O43365 AC025281.1-201ENST00000567026 265 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 MIR4644-201ENST00000579929 84 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 AC012493.2-201ENST00000595083 291 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 AC008749.1-201ENST00000597650 306 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 AL391813.1-201ENST00000603098 260 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXA3O43365 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXA3O43365 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXA3O43365 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
HOXA3O43365 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXA3O43365 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
HOXA3O43365 AC135776.4-201ENST00000624300 1904 ntBASIC3.05□□□□□ -1.92
HOXA3O43365 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXA3O43365 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXA3O43365 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXA3O43365 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXA3O43365 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXA3O43365 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXA3O43365 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
HOXA3O43365 AL136164.4-201ENST00000625013 2135 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.04□□□□□ -1.92
HOXA3O43365 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.04□□□□□ -1.92
HOXA3O43365 Y_RNA.29-201ENST00000362570 113 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 RNA5SP295-201ENST00000362655 121 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 Y_RNA.44-201ENST00000362676 108 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 Y_RNA.200-201ENST00000364018 102 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 RNU6-245P-201ENST00000384020 107 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 RNU6-378P-201ENST00000384324 107 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 RNU6-1077P-201ENST00000410506 102 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 AIMP1P2-201ENST00000425294 312 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 PIGPP3-201ENST00000425307 415 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXA3O43365 RPL23AP83-201ENST00000434984 473 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 SUMO1P2-201ENST00000452524 304 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXA3O43365 snoU13.14-201ENST00000459372 104 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 AC025554.1-201ENST00000505641 188 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 AC074133.1-201ENST00000515696 183 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXA3O43365 AC005176.2-201ENST00000596933 147 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 AL356575.1-201ENST00000603008 283 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 AL034555.1-201ENST00000604816 211 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 AL365434.2-201ENST00000607979 234 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.04□□□□□ -1.92
HOXA3O43365 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.04□□□□□ -1.92
HOXA3O43365 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.04□□□□□ -1.92
HOXA3O43365 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HOXA3O43365 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HOXA3O43365 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXA3O43365 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HOXA3O43365 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HOXA3O43365 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXA3O43365 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
HOXA3O43365 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA3O43365 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA3O43365 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA3O43365 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXA3O43365 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA3O43365 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
HOXA3O43365 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA3O43365 Y_RNA.76-201ENST00000362931 109 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 RNU6-793P-201ENST00000384233 104 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 Y_RNA.498-201ENST00000384460 102 ntBASIC3.03□□□□□ -1.92
HOXA3O43365 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms