Protein–RNA interactions for Protein: Q9ULD4

BRPF3, Bromodomain and PHD finger-containing protein 3, humanhuman

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRPF3Q9ULD4 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC4.38□□□□□ -1.71
BRPF3Q9ULD4 AP003122.5-201ENST00000527668 3766 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 RNU6-487P-201ENST00000365430 104 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 SNORD63-201ENST00000384262 68 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 RNU6-622P-201ENST00000384272 103 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 RNU6-102P-201ENST00000384485 104 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 RNU6-159P-201ENST00000391080 106 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 RN7SKP156-201ENST00000410308 342 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 MTND5P15-201ENST00000434246 349 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 AL161651.1-201ENST00000440882 223 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 AC091179.1-201ENST00000461606 579 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 AL133162.1-201ENST00000463228 453 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 AC026402.1-201ENST00000513642 170 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 RN7SKP49-201ENST00000516675 260 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 SCARNA24.2-201ENST00000516968 130 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 AP006245.1-201ENST00000522549 120 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 POC1B-211ENST00000549504 581 ntTSL 5 BASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 AC021231.3-201ENST00000558497 370 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 AC106785.1-201ENST00000565935 262 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 AC009779.6-201ENST00000603972 165 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 HOTTIP_4.1-201ENST00000618195 165 ntBASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
BRPF3Q9ULD4 AC010680.1-201ENST00000590024 3590 ntBASIC4.36□□□□□ -1.71
BRPF3Q9ULD4 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC4.36□□□□□ -1.71
BRPF3Q9ULD4 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
BRPF3Q9ULD4 RNU6-1159P-201ENST00000362933 107 ntBASIC4.36□□□□□ -1.71
BRPF3Q9ULD4 RNU6-281P-201ENST00000384212 103 ntBASIC4.36□□□□□ -1.71
BRPF3Q9ULD4 RNA5SP424-201ENST00000390988 115 ntBASIC4.36□□□□□ -1.71
BRPF3Q9ULD4 snoU13.6-201ENST00000458785 104 ntBASIC4.36□□□□□ -1.71
BRPF3Q9ULD4 RNU7-23P-201ENST00000459465 62 ntBASIC4.36□□□□□ -1.71
BRPF3Q9ULD4 AKIRIN2P1-201ENST00000505898 352 ntBASIC4.36□□□□□ -1.71
BRPF3Q9ULD4 RNA5SP164-201ENST00000516533 110 ntBASIC4.36□□□□□ -1.71
BRPF3Q9ULD4 RN7SKP209-201ENST00000516888 304 ntBASIC4.36□□□□□ -1.71
BRPF3Q9ULD4 RNU6-1198P-201ENST00000516904 67 ntBASIC4.36□□□□□ -1.71
BRPF3Q9ULD4 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC4.36□□□□□ -1.71
BRPF3Q9ULD4 AC099778.2-201ENST00000610904 211 ntBASIC4.36□□□□□ -1.71
BRPF3Q9ULD4 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
BRPF3Q9ULD4 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
BRPF3Q9ULD4 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 AC004944.1-201ENST00000517807 3059 ntBASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 RNU6-1266P-201ENST00000362794 105 ntBASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 Y_RNA.65-201ENST00000362846 100 ntBASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 Y_RNA.277-201ENST00000364754 102 ntBASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 RNU6-198P-201ENST00000384258 104 ntBASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 RNU2-14P-201ENST00000411053 191 ntBASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 RNU6-1001P-201ENST00000411265 100 ntBASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 AC017079.2-201ENST00000416102 485 ntBASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 AL358075.3-201ENST00000426289 226 ntBASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 AL445305.1-201ENST00000432577 575 ntBASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 AC005002.2-201ENST00000438228 269 ntBASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 RNU5B-3P-201ENST00000516601 115 ntBASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 BX284668.6-201ENST00000606899 438 ntBASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC4.35□□□□□ -1.71
BRPF3Q9ULD4 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
BRPF3Q9ULD4 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
BRPF3Q9ULD4 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
BRPF3Q9ULD4 RNU4-90P-201ENST00000362773 141 ntBASIC4.34□□□□□ -1.71
BRPF3Q9ULD4 RNU6-1285P-201ENST00000363480 105 ntBASIC4.34□□□□□ -1.71
BRPF3Q9ULD4 RNU6-290P-201ENST00000365212 101 ntBASIC4.34□□□□□ -1.71
BRPF3Q9ULD4 Y_RNA.462-201ENST00000384268 102 ntBASIC4.34□□□□□ -1.71
BRPF3Q9ULD4 U3.19-201ENST00000390893 196 ntBASIC4.34□□□□□ -1.71
BRPF3Q9ULD4 SNORD58.1-201ENST00000391313 66 ntBASIC4.34□□□□□ -1.71
BRPF3Q9ULD4 AC023141.4-201ENST00000412031 328 ntBASIC4.34□□□□□ -1.71
BRPF3Q9ULD4 AL714022.1-201ENST00000439897 151 ntBASIC4.34□□□□□ -1.71
BRPF3Q9ULD4 HSPE1P25-201ENST00000455484 251 ntBASIC4.34□□□□□ -1.71
BRPF3Q9ULD4 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC4.34□□□□□ -1.71
BRPF3Q9ULD4 AC022080.3-201ENST00000544433 482 ntBASIC4.34□□□□□ -1.71
BRPF3Q9ULD4 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC4.34□□□□□ -1.71
BRPF3Q9ULD4 MIR5187-201ENST00000583479 76 ntBASIC4.34□□□□□ -1.71
BRPF3Q9ULD4 KLKP1-201ENST00000595979 403 ntBASIC4.34□□□□□ -1.71
BRPF3Q9ULD4 MESTIT1_1.1-201ENST00000618871 140 ntBASIC4.34□□□□□ -1.71
BRPF3Q9ULD4 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
BRPF3Q9ULD4 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.34□□□□□ -1.72
BRPF3Q9ULD4 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC4.34□□□□□ -1.72
BRPF3Q9ULD4 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
BRPF3Q9ULD4 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.33□□□□□ -1.72
BRPF3Q9ULD4 Y_RNA.117-201ENST00000363294 101 ntBASIC4.33□□□□□ -1.72
BRPF3Q9ULD4 SNORD115-8-201ENST00000363856 82 ntBASIC4.33□□□□□ -1.72
BRPF3Q9ULD4 SNORD115-38-201ENST00000365037 82 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms