Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.2□□□□□ -1.9
DDX56Q9NY93 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.2□□□□□ -1.9
DDX56Q9NY93 Y_RNA.259-201ENST00000364619 101 ntBASIC3.2□□□□□ -1.9
DDX56Q9NY93 RNU6-546P-201ENST00000383991 107 ntBASIC3.2□□□□□ -1.9
DDX56Q9NY93 RNU6-842P-201ENST00000384269 107 ntBASIC3.2□□□□□ -1.9
DDX56Q9NY93 SNORD116-29-201ENST00000384516 83 ntBASIC3.2□□□□□ -1.9
DDX56Q9NY93 Y_RNA.535-201ENST00000384612 99 ntBASIC3.2□□□□□ -1.9
DDX56Q9NY93 SNORA75.4-201ENST00000391278 119 ntBASIC3.2□□□□□ -1.9
DDX56Q9NY93 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.2□□□□□ -1.9
DDX56Q9NY93 USMG5P1-201ENST00000425964 177 ntBASIC3.2□□□□□ -1.9
DDX56Q9NY93 AC009238.1-201ENST00000442165 424 ntBASIC3.2□□□□□ -1.9
DDX56Q9NY93 AC009237.6-201ENST00000446969 424 ntBASIC3.2□□□□□ -1.9
DDX56Q9NY93 AC091153.1-201ENST00000466297 402 ntBASIC3.2□□□□□ -1.9
DDX56Q9NY93 FO393415.2-201ENST00000480085 343 ntBASIC3.2□□□□□ -1.9
DDX56Q9NY93 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.2□□□□□ -1.9
DDX56Q9NY93 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.2□□□□□ -1.9
DDX56Q9NY93 EIF4A1P12-201ENST00000551910 141 ntBASIC3.2□□□□□ -1.9
DDX56Q9NY93 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC3.2□□□□□ -1.9
DDX56Q9NY93 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.2□□□□□ -1.9
DDX56Q9NY93 MIR7975-201ENST00000619350 68 ntBASIC3.2□□□□□ -1.9
DDX56Q9NY93 AC098657.3-201ENST00000620434 263 ntBASIC3.2□□□□□ -1.9
DDX56Q9NY93 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.2□□□□□ -1.9
DDX56Q9NY93 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
DDX56Q9NY93 KPNA2P1-201ENST00000458289 1591 ntBASIC3.2□□□□□ -1.9
DDX56Q9NY93 AC073544.1-201ENST00000600110 1595 ntBASIC3.2□□□□□ -1.9
DDX56Q9NY93 AL035425.3-201ENST00000564206 4996 ntBASIC3.19□□□□□ -1.9
DDX56Q9NY93 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
DDX56Q9NY93 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
DDX56Q9NY93 RNU6-1188P-201ENST00000363795 107 ntBASIC3.19□□□□□ -1.9
DDX56Q9NY93 Y_RNA.419-201ENST00000384041 102 ntBASIC3.19□□□□□ -1.9
DDX56Q9NY93 SNORA46.1-201ENST00000391069 153 ntBASIC3.19□□□□□ -1.9
DDX56Q9NY93 MIR1294-201ENST00000408503 142 ntBASIC3.19□□□□□ -1.9
DDX56Q9NY93 RNA5SP201-201ENST00000410316 124 ntBASIC3.19□□□□□ -1.9
DDX56Q9NY93 RPS26P42-201ENST00000413485 326 ntBASIC3.19□□□□□ -1.9
DDX56Q9NY93 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.19□□□□□ -1.9
DDX56Q9NY93 RN7SKP210-201ENST00000459176 261 ntBASIC3.19□□□□□ -1.9
DDX56Q9NY93 SNORA84-201ENST00000459229 133 ntBASIC3.19□□□□□ -1.9
DDX56Q9NY93 SNORD19B-201ENST00000459623 84 ntBASIC3.19□□□□□ -1.9
DDX56Q9NY93 RPL7P42-201ENST00000481005 679 ntBASIC3.19□□□□□ -1.9
DDX56Q9NY93 RN7SL633P-201ENST00000488974 297 ntBASIC3.19□□□□□ -1.9
DDX56Q9NY93 RPL23AP75-201ENST00000491601 451 ntBASIC3.19□□□□□ -1.9
DDX56Q9NY93 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.19□□□□□ -1.9
DDX56Q9NY93 Y_RNA.718-201ENST00000517110 102 ntBASIC3.19□□□□□ -1.9
DDX56Q9NY93 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC3.19□□□□□ -1.9
DDX56Q9NY93 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.19□□□□□ -1.9
DDX56Q9NY93 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.19□□□□□ -1.9
DDX56Q9NY93 PCGEM1.1-201ENST00000613431 131 ntBASIC3.19□□□□□ -1.9
DDX56Q9NY93 AC084781.2-201ENST00000615568 161 ntBASIC3.19□□□□□ -1.9
DDX56Q9NY93 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC3.19□□□□□ -1.9
DDX56Q9NY93 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.18□□□□□ -1.9
DDX56Q9NY93 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
DDX56Q9NY93 Y_RNA.404-201ENST00000383978 102 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 RNU6-1072P-201ENST00000384703 107 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 RNU6-443P-201ENST00000384780 107 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 RNU2-32P-201ENST00000411193 191 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 AC005326.1-201ENST00000429197 123 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 RPL23AP50-201ENST00000434149 455 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 AC112220.1-201ENST00000434628 355 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 AC236972.2-201ENST00000434979 310 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 AC087477.1-201ENST00000465747 340 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 AC103975.1-201ENST00000482506 483 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 RNU6-1198P-201ENST00000516904 67 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 RN7SKP272-201ENST00000516988 232 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 HSPE1P18-201ENST00000517602 280 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 CBX3P7-201ENST00000532876 502 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.18□□□□□ -1.9
DDX56Q9NY93 MIR5680-201ENST00000577577 84 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.18□□□□□ -1.9
DDX56Q9NY93 AC023043.3-201ENST00000593113 385 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 RPL17P51-201ENST00000605218 238 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 AL627309.6-201ENST00000606857 840 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 AL669831.3-213ENST00000636676 183 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 AP006437.1-201ENST00000641440 3685 ntBASIC3.18□□□□□ -1.9
DDX56Q9NY93 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
DDX56Q9NY93 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.17□□□□□ -1.9
DDX56Q9NY93 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
DDX56Q9NY93 SNORD67-201ENST00000390833 111 ntBASIC3.17□□□□□ -1.9
DDX56Q9NY93 RNU6-1093P-201ENST00000391194 107 ntBASIC3.17□□□□□ -1.9
DDX56Q9NY93 MTCYBP4-201ENST00000401524 249 ntBASIC3.17□□□□□ -1.9
DDX56Q9NY93 RN7SKP27-201ENST00000410684 333 ntBASIC3.17□□□□□ -1.9
DDX56Q9NY93 MTCO2P27-201ENST00000420740 428 ntBASIC3.17□□□□□ -1.9
DDX56Q9NY93 AL358453.1-201ENST00000422522 250 ntBASIC3.17□□□□□ -1.9
DDX56Q9NY93 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.17□□□□□ -1.9
DDX56Q9NY93 OR2AQ1P-201ENST00000451972 200 ntBASIC3.17□□□□□ -1.9
DDX56Q9NY93 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC3.17□□□□□ -1.9
DDX56Q9NY93 RNU7-175P-201ENST00000515915 61 ntBASIC3.17□□□□□ -1.9
DDX56Q9NY93 AC022616.8-201ENST00000533569 253 ntBASIC3.17□□□□□ -1.9
DDX56Q9NY93 UBL5P2-201ENST00000583788 219 ntBASIC3.17□□□□□ -1.9
DDX56Q9NY93 AC008739.3-201ENST00000603262 127 ntBASIC3.17□□□□□ -1.9
DDX56Q9NY93 AL050343.2-201ENST00000607338 280 ntBASIC3.17□□□□□ -1.9
DDX56Q9NY93 AC126177.8-201ENST00000618339 1015 ntBASIC3.17□□□□□ -1.9
DDX56Q9NY93 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
DDX56Q9NY93 AC008264.2-201ENST00000610193 3731 ntBASIC3.17□□□□□ -1.9
DDX56Q9NY93 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.17□□□□□ -1.9
DDX56Q9NY93 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC3.16□□□□□ -1.9
DDX56Q9NY93 AC073325.2-201ENST00000339545 159 ntBASIC3.16□□□□□ -1.9
DDX56Q9NY93 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.16□□□□□ -1.9
DDX56Q9NY93 SNORD115-32-201ENST00000364079 82 ntBASIC3.16□□□□□ -1.9
DDX56Q9NY93 Y_RNA.533-201ENST00000384596 114 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 195.6 ms