Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 MTCO2P8-201ENST00000412213 658 ntBASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 EIF1P1-201ENST00000421436 341 ntBASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 RNU7-14P-201ENST00000459331 62 ntBASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 MIR3683-201ENST00000580847 82 ntBASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 AC107304.1-201ENST00000604229 296 ntBASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 PCGEM1.1-201ENST00000613431 131 ntBASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 AC006927.3-201ENST00000638789 384 ntBASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 MTND5P35-201ENST00000557537 1720 ntBASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
VCX3AQ9NNX9 RNU4-82P-201ENST00000362443 140 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 SNORA63D-201ENST00000364359 132 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 RNU6-1019P-201ENST00000364424 107 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 RNU6-169P-201ENST00000365336 107 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 SNORA20.2-201ENST00000383922 131 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 AC098592.1-201ENST00000419352 333 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 AL356583.2-201ENST00000426536 280 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 MTND1P18-201ENST00000448191 573 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 RPS29P29-201ENST00000456396 171 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 AC010531.2-201ENST00000465012 153 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 RAP1BP2-201ENST00000478270 544 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 AC079140.3-201ENST00000511111 550 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 SNORD60.2-201ENST00000516883 86 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 AC023050.3-201ENST00000541142 333 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 HSPE1P4-201ENST00000550617 308 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 MIR3923-201ENST00000579521 83 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 AC009977.1-201ENST00000586015 570 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 BNIP3P16-201ENST00000589779 534 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 AC078795.3-201ENST00000602913 472 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 AC112191.3-201ENST00000604371 277 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 AC009318.2-201ENST00000610917 651 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 AC009033.1-201ENST00000624279 431 ntBASIC1.05□□□□□ -2.24
VCX3AQ9NNX9 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 U3.9-201ENST00000363823 204 ntBASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 SNORD31B-201ENST00000364977 69 ntBASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 RNU6-715P-201ENST00000365204 103 ntBASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 RNU6-378P-201ENST00000384324 107 ntBASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 MIR194-1-201ENST00000384892 85 ntBASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 RNU6-550P-201ENST00000391057 101 ntBASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 SNORA40.6-201ENST00000391153 128 ntBASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 HIGD1AP15-201ENST00000416198 280 ntBASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 AL354692.1-201ENST00000423044 315 ntBASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 AC104850.1-201ENST00000435940 476 ntBASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 GTF2IP13-201ENST00000438487 386 ntBASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 AC016925.1-201ENST00000458303 298 ntBASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 AC004223.1-201ENST00000479840 271 ntBASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 AC104136.1-201ENST00000512969 394 ntBASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 RNU5F-4P-201ENST00000516581 114 ntBASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 RAB11AP2-201ENST00000545905 639 ntBASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 AC091304.9-201ENST00000612091 226 ntBASIC1.04□□□□□ -2.24
VCX3AQ9NNX9 RNU6-500P-201ENST00000362349 107 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 U3.4-201ENST00000363352 213 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 RNU1-96P-201ENST00000364163 162 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 RNY1P12-201ENST00000364251 105 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 RNU5E-5P-201ENST00000365379 116 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 AL117342.1-201ENST00000404861 406 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 RN7SKP61-201ENST00000410642 295 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 ARL5AP1-201ENST00000418991 388 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 EPS15P1-201ENST00000448836 336 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 USP9YP12-201ENST00000450481 570 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 AC007547.1-201ENST00000462177 490 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 AC034244.1-201ENST00000507687 207 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 RNU6-1041P-201ENST00000516254 102 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 RNU6-1178P-201ENST00000516674 107 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 RNA5SP481-201ENST00000516814 122 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 AC022878.1-201ENST00000530684 149 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 BNIP3P8-201ENST00000597863 560 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 AL391834.2-201ENST00000609982 546 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 MIR6845-201ENST00000613182 61 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 AC138649.3-201ENST00000622154 254 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 AC011155.2-201ENST00000623202 216 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 MTND4P14-201ENST00000435799 1354 ntBASIC1.03□□□□□ -2.24
VCX3AQ9NNX9 RNU4-56P-201ENST00000364700 142 ntBASIC1.02□□□□□ -2.25
VCX3AQ9NNX9 RNU6-1187P-201ENST00000364771 110 ntBASIC1.02□□□□□ -2.25
VCX3AQ9NNX9 RNU4-91P-201ENST00000364778 135 ntBASIC1.02□□□□□ -2.25
VCX3AQ9NNX9 SNORA26.3-201ENST00000391119 136 ntBASIC1.02□□□□□ -2.25
VCX3AQ9NNX9 AC106883.1-201ENST00000418805 562 ntBASIC1.02□□□□□ -2.25
VCX3AQ9NNX9 AC078809.1-201ENST00000427601 140 ntBASIC1.02□□□□□ -2.25
VCX3AQ9NNX9 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.02□□□□□ -2.25
VCX3AQ9NNX9 DYNLT3P2-201ENST00000442517 295 ntBASIC1.02□□□□□ -2.25
VCX3AQ9NNX9 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.02□□□□□ -2.25
VCX3AQ9NNX9 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 124 ms