Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.42□□□□□ -2.02
NPHP3Q7Z494 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
NPHP3Q7Z494 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
NPHP3Q7Z494 Y_RNA.224-201ENST00000364308 111 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 RNA5SP138-201ENST00000365098 114 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 RNU4-66P-201ENST00000365199 138 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
NPHP3Q7Z494 RNU6-38P-201ENST00000384085 107 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 RNU1-52P-201ENST00000384190 164 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 AL133475.1-201ENST00000404414 305 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 RNU6-908P-201ENST00000410160 94 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 AC004965.1-201ENST00000413033 213 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC2.42□□□□□ -2.02
NPHP3Q7Z494 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.42□□□□□ -2.02
NPHP3Q7Z494 AL121601.2-201ENST00000438019 707 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.42□□□□□ -2.02
NPHP3Q7Z494 RNU6-333P-201ENST00000459117 107 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 MTCO3P38-201ENST00000468910 766 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.42□□□□□ -2.02
NPHP3Q7Z494 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.42□□□□□ -2.02
NPHP3Q7Z494 AP005902.1-201ENST00000521358 186 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.42□□□□□ -2.02
NPHP3Q7Z494 AC087441.2-201ENST00000529141 262 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 AC007375.1-201ENST00000554513 578 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 AL138976.2-201ENST00000563989 694 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.42□□□□□ -2.02
NPHP3Q7Z494 AC080078.2-201ENST00000603766 501 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 AC002044.1-201ENST00000606707 158 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.42□□□□□ -2.02
NPHP3Q7Z494 uc_338.5-201ENST00000611839 155 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 RMST_4.1-201ENST00000616886 107 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 MIR1321-201ENST00000637766 79 ntBASIC2.42□□□□□ -2.02
NPHP3Q7Z494 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.41□□□□□ -2.02
NPHP3Q7Z494 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
NPHP3Q7Z494 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
NPHP3Q7Z494 RNU6-942P-201ENST00000363002 107 ntBASIC2.41□□□□□ -2.02
NPHP3Q7Z494 SNORA67.1-201ENST00000364749 141 ntBASIC2.41□□□□□ -2.02
NPHP3Q7Z494 Y_RNA.324-201ENST00000365165 102 ntBASIC2.41□□□□□ -2.02
NPHP3Q7Z494 SNORD115-47-201ENST00000391226 86 ntBASIC2.41□□□□□ -2.02
NPHP3Q7Z494 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.41□□□□□ -2.02
NPHP3Q7Z494 Y_RNA.599-201ENST00000410489 109 ntBASIC2.41□□□□□ -2.02
NPHP3Q7Z494 Y_RNA.619-201ENST00000410951 90 ntBASIC2.41□□□□□ -2.02
NPHP3Q7Z494 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.41□□□□□ -2.02
NPHP3Q7Z494 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.41□□□□□ -2.02
NPHP3Q7Z494 MTND1P4-201ENST00000435196 415 ntBASIC2.41□□□□□ -2.02
NPHP3Q7Z494 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.41□□□□□ -2.02
NPHP3Q7Z494 MTND3P16-201ENST00000452205 344 ntBASIC2.41□□□□□ -2.02
NPHP3Q7Z494 AL139109.1-201ENST00000455491 297 ntBASIC2.41□□□□□ -2.02
NPHP3Q7Z494 AC112771.1-201ENST00000463581 102 ntBASIC2.41□□□□□ -2.02
NPHP3Q7Z494 MRPL42P6-201ENST00000486397 371 ntBASIC2.41□□□□□ -2.02
NPHP3Q7Z494 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.41□□□□□ -2.02
NPHP3Q7Z494 RNU6-718P-201ENST00000516166 105 ntBASIC2.41□□□□□ -2.02
NPHP3Q7Z494 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.41□□□□□ -2.02
NPHP3Q7Z494 MTND1P35-201ENST00000526739 508 ntBASIC2.41□□□□□ -2.02
NPHP3Q7Z494 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.41□□□□□ -2.02
NPHP3Q7Z494 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.41□□□□□ -2.02
NPHP3Q7Z494 AC002984.1-201ENST00000591692 448 ntBASIC2.41□□□□□ -2.02
NPHP3Q7Z494 AL162413.1-201ENST00000603198 110 ntBASIC2.41□□□□□ -2.02
NPHP3Q7Z494 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
NPHP3Q7Z494 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.4□□□□□ -2.03
NPHP3Q7Z494 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.4□□□□□ -2.03
NPHP3Q7Z494 Y_RNA.6-201ENST00000362350 114 ntBASIC2.4□□□□□ -2.03
NPHP3Q7Z494 RNU6-858P-201ENST00000362436 107 ntBASIC2.4□□□□□ -2.03
NPHP3Q7Z494 Y_RNA.505-201ENST00000384489 102 ntBASIC2.4□□□□□ -2.03
NPHP3Q7Z494 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
NPHP3Q7Z494 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.4□□□□□ -2.03
NPHP3Q7Z494 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.4□□□□□ -2.03
NPHP3Q7Z494 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.4□□□□□ -2.03
NPHP3Q7Z494 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.4□□□□□ -2.03
NPHP3Q7Z494 AC097463.2-201ENST00000421074 142 ntBASIC2.4□□□□□ -2.03
NPHP3Q7Z494 RPS3AP44-201ENST00000425466 790 ntBASIC2.4□□□□□ -2.03
NPHP3Q7Z494 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.4□□□□□ -2.03
NPHP3Q7Z494 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.4□□□□□ -2.03
NPHP3Q7Z494 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.4□□□□□ -2.03
NPHP3Q7Z494 AC087884.1-201ENST00000469738 328 ntBASIC2.4□□□□□ -2.03
NPHP3Q7Z494 HMGB3P3-201ENST00000510526 400 ntBASIC2.4□□□□□ -2.03
NPHP3Q7Z494 AL157687.1-201ENST00000554853 619 ntBASIC2.4□□□□□ -2.03
NPHP3Q7Z494 ZNF519P2-201ENST00000557032 169 ntBASIC2.4□□□□□ -2.03
NPHP3Q7Z494 RPS3AP23-202ENST00000574601 686 ntBASIC2.4□□□□□ -2.03
NPHP3Q7Z494 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.4□□□□□ -2.03
NPHP3Q7Z494 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC2.4□□□□□ -2.03
NPHP3Q7Z494 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
NPHP3Q7Z494 AC080100.1-201ENST00000624239 5356 ntBASIC2.39□□□□□ -2.03
NPHP3Q7Z494 Y_RNA.9-201ENST00000362354 101 ntBASIC2.39□□□□□ -2.03
NPHP3Q7Z494 RNU6-37P-201ENST00000362692 107 ntBASIC2.39□□□□□ -2.03
NPHP3Q7Z494 RNU6-11P-201ENST00000364234 107 ntBASIC2.39□□□□□ -2.03
NPHP3Q7Z494 Y_RNA.327-201ENST00000365201 102 ntBASIC2.39□□□□□ -2.03
NPHP3Q7Z494 Y_RNA.378-201ENST00000365652 113 ntBASIC2.39□□□□□ -2.03
NPHP3Q7Z494 RNU6-25P-201ENST00000383873 107 ntBASIC2.39□□□□□ -2.03
NPHP3Q7Z494 RNU6-1-201ENST00000383898 107 ntBASIC2.39□□□□□ -2.03
NPHP3Q7Z494 Y_RNA.402-201ENST00000383972 102 ntBASIC2.39□□□□□ -2.03
NPHP3Q7Z494 RNU6-48P-201ENST00000384161 107 ntBASIC2.39□□□□□ -2.03
NPHP3Q7Z494 RNU6-36P-201ENST00000384172 107 ntBASIC2.39□□□□□ -2.03
NPHP3Q7Z494 Y_RNA.450-201ENST00000384198 113 ntBASIC2.39□□□□□ -2.03
NPHP3Q7Z494 RNU6-4P-201ENST00000384205 107 ntBASIC2.39□□□□□ -2.03
NPHP3Q7Z494 RNU6-5P-201ENST00000384238 107 ntBASIC2.39□□□□□ -2.03
NPHP3Q7Z494 RNU6-3P-201ENST00000384314 107 ntBASIC2.39□□□□□ -2.03
NPHP3Q7Z494 RNU6-16P-201ENST00000384385 107 ntBASIC2.39□□□□□ -2.03
NPHP3Q7Z494 RNU6-15P-201ENST00000384534 107 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms