Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
COL3A1P02461 Z73965.1-201ENST00000623412 2297 ntBASIC3.21□□□□□ -1.9
COL3A1P02461 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL3A1P02461 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.21□□□□□ -1.9
COL3A1P02461 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
COL3A1P02461 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.21□□□□□ -1.9
COL3A1P02461 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
COL3A1P02461 Y_RNA.48-201ENST00000362710 103 ntBASIC3.21□□□□□ -1.9
COL3A1P02461 RNU6-288P-201ENST00000363690 104 ntBASIC3.21□□□□□ -1.9
COL3A1P02461 RNU6-338P-201ENST00000383888 105 ntBASIC3.21□□□□□ -1.9
COL3A1P02461 Y_RNA.471-201ENST00000384312 102 ntBASIC3.21□□□□□ -1.9
COL3A1P02461 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
COL3A1P02461 SAR1AP2-201ENST00000392696 594 ntBASIC3.21□□□□□ -1.9
COL3A1P02461 EI24P2-201ENST00000397776 1076 ntBASIC3.21□□□□□ -1.9
COL3A1P02461 SNORA3.2-201ENST00000408221 125 ntBASIC3.21□□□□□ -1.9
COL3A1P02461 RN7SKP123-201ENST00000410732 291 ntBASIC3.21□□□□□ -1.9
COL3A1P02461 SDAD1P3-201ENST00000427380 333 ntBASIC3.21□□□□□ -1.9
COL3A1P02461 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.21□□□□□ -1.9
COL3A1P02461 LINC01399-202ENST00000458450 244 ntBASIC3.21□□□□□ -1.9
COL3A1P02461 RPS20P22-201ENST00000473700 357 ntBASIC3.21□□□□□ -1.9
COL3A1P02461 AC005921.1-201ENST00000510589 286 ntBASIC3.21□□□□□ -1.9
COL3A1P02461 RNU6-397P-201ENST00000516226 104 ntBASIC3.21□□□□□ -1.9
COL3A1P02461 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.21□□□□□ -1.9
COL3A1P02461 AP002770.2-201ENST00000543613 532 ntBASIC3.21□□□□□ -1.9
COL3A1P02461 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.21□□□□□ -1.9
COL3A1P02461 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.21□□□□□ -1.9
COL3A1P02461 AC023043.3-201ENST00000593113 385 ntBASIC3.21□□□□□ -1.9
COL3A1P02461 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
COL3A1P02461 AC004792.1-201ENST00000614523 137 ntBASIC3.21□□□□□ -1.9
COL3A1P02461 MIR4275-201ENST00000636486 87 ntBASIC3.21□□□□□ -1.9
COL3A1P02461 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.21□□□□□ -1.9
COL3A1P02461 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
COL3A1P02461 CUL1P1-201ENST00000509510 2425 ntBASIC3.2□□□□□ -1.9
COL3A1P02461 ZNF658B-202ENST00000615961 3375 ntBASIC3.2□□□□□ -1.9
COL3A1P02461 Y_RNA.183-201ENST00000363882 113 ntBASIC3.2□□□□□ -1.9
COL3A1P02461 SNORD27-201ENST00000363981 72 ntBASIC3.2□□□□□ -1.9
COL3A1P02461 RNY3P11-201ENST00000364153 102 ntBASIC3.2□□□□□ -1.9
COL3A1P02461 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.2□□□□□ -1.9
COL3A1P02461 RNU6-339P-201ENST00000384310 107 ntBASIC3.2□□□□□ -1.9
COL3A1P02461 RNU6-933P-201ENST00000384424 107 ntBASIC3.2□□□□□ -1.9
COL3A1P02461 RNU6-14P-201ENST00000384630 106 ntBASIC3.2□□□□□ -1.9
COL3A1P02461 MIR548I2-201ENST00000408348 149 ntBASIC3.2□□□□□ -1.9
COL3A1P02461 AC092809.3-201ENST00000415453 231 ntBASIC3.2□□□□□ -1.9
COL3A1P02461 RPL30P3-201ENST00000424262 333 ntBASIC3.2□□□□□ -1.9
COL3A1P02461 AL138752.1-201ENST00000452964 351 ntBASIC3.2□□□□□ -1.9
COL3A1P02461 Y_RNA.687-201ENST00000516558 91 ntBASIC3.2□□□□□ -1.9
COL3A1P02461 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.2□□□□□ -1.9
COL3A1P02461 CBX3P8-201ENST00000532412 525 ntBASIC3.2□□□□□ -1.9
COL3A1P02461 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.2□□□□□ -1.9
COL3A1P02461 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL3A1P02461 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL3A1P02461 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
COL3A1P02461 MIR335-201ENST00000362173 94 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 Y_RNA.150-201ENST00000363562 102 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC3.19□□□□□ -1.9
COL3A1P02461 RNU6-662P-201ENST00000384253 104 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 Y_RNA.462-201ENST00000384268 102 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 MIR764-201ENST00000390811 85 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 RNU6-821P-201ENST00000390995 107 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 MTCO2P33-201ENST00000402100 465 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.19□□□□□ -1.9
COL3A1P02461 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC3.19□□□□□ -1.9
COL3A1P02461 AC007098.1-201ENST00000420122 367 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 AC096920.1-201ENST00000423991 241 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.19□□□□□ -1.9
COL3A1P02461 RPS12P2-201ENST00000439728 269 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 NDUFB1P2-201ENST00000449477 176 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 RN7SL636P-201ENST00000497504 294 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.19□□□□□ -1.9
COL3A1P02461 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.19□□□□□ -1.9
COL3A1P02461 RNU5B-3P-201ENST00000516601 115 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 AC126177.3-201ENST00000551839 688 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 MIR3910-1-201ENST00000580936 111 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 AC008962.1-201ENST00000605729 304 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 AL031601.2-202ENST00000622650 282 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
COL3A1P02461 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.19□□□□□ -1.9
COL3A1P02461 AL450326.2-201ENST00000421913 1962 ntBASIC3.19□□□□□ -1.9
COL3A1P02461 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
COL3A1P02461 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
COL3A1P02461 AL391987.6-201ENST00000305671 199 ntBASIC3.18□□□□□ -1.9
COL3A1P02461 RNU6-280P-201ENST00000364145 104 ntBASIC3.18□□□□□ -1.9
COL3A1P02461 SNORA69.1-201ENST00000390904 137 ntBASIC3.18□□□□□ -1.9
COL3A1P02461 RNU2-25P-201ENST00000411041 191 ntBASIC3.18□□□□□ -1.9
COL3A1P02461 RNA5SP344-201ENST00000411081 104 ntBASIC3.18□□□□□ -1.9
COL3A1P02461 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.18□□□□□ -1.9
COL3A1P02461 HMGB1P27-201ENST00000431429 603 ntBASIC3.18□□□□□ -1.9
COL3A1P02461 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
COL3A1P02461 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.18□□□□□ -1.9
COL3A1P02461 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.18□□□□□ -1.9
COL3A1P02461 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.18□□□□□ -1.9
COL3A1P02461 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.18□□□□□ -1.9
COL3A1P02461 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC3.18□□□□□ -1.9
COL3A1P02461 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.18□□□□□ -1.9
COL3A1P02461 SNORA31.6-201ENST00000516241 130 ntBASIC3.18□□□□□ -1.9
COL3A1P02461 RN7SKP277-201ENST00000516895 283 ntBASIC3.18□□□□□ -1.9
COL3A1P02461 AC068446.3-201ENST00000555285 382 ntBASIC3.18□□□□□ -1.9
COL3A1P02461 OR4H12P-201ENST00000556269 907 ntBASIC3.18□□□□□ -1.9
COL3A1P02461 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms