Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 MIR4308-201ENST00000580634 81 ntBASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 AL137849.1-201ENST00000604767 169 ntBASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 AL365265.1-201ENST00000621045 234 ntBASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 Y_RNA.331-201ENST00000365267 102 ntBASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 U3.19-201ENST00000390893 196 ntBASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 FTH1P15-201ENST00000406984 280 ntBASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 NDUFB4P6-201ENST00000436819 366 ntBASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 POLR2KP2-201ENST00000438155 177 ntBASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 GPM6BP3-201ENST00000442797 145 ntBASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 RPS4XP22-201ENST00000480755 780 ntBASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 TRBV12-2-201ENST00000489763 344 ntBASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 AC078918.1-201ENST00000498515 228 ntBASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 HSPE1P4-201ENST00000550617 308 ntBASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 AL391261.4-201ENST00000616012 481 ntBASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 AC012314.7-201ENST00000619693 93 ntBASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 AC006001.4-201ENST00000622243 395 ntBASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CHMP3Q9Y3E7 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 RNU6-142P-201ENST00000384019 107 ntBASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 RNA5SP424-201ENST00000390988 115 ntBASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 RNU6-394P-201ENST00000410735 107 ntBASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 AC074117.2-201ENST00000417130 397 ntBASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 AC010095.1-201ENST00000443543 144 ntBASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 UQCRBP2-201ENST00000447827 297 ntBASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 SNORD2.1-201ENST00000458762 69 ntBASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 MIR5571-201ENST00000577998 113 ntBASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 MIR3922-201ENST00000585192 84 ntBASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 AC019159.1-201ENST00000605094 187 ntBASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 RNU1-30P-201ENST00000606575 163 ntBASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 AC005828.6-201ENST00000606610 232 ntBASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.62□□□□□ -1.67
CHMP3Q9Y3E7 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 RNU6-884P-201ENST00000363889 107 ntBASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 SNORA7.2-201ENST00000364446 145 ntBASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 RNU6-1135P-201ENST00000411083 103 ntBASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 HMGN2P30-201ENST00000423237 256 ntBASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 AC007395.1-201ENST00000451333 677 ntBASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 AP000705.1-201ENST00000454567 350 ntBASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 AC097462.2-201ENST00000504623 481 ntBASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 AC005176.2-201ENST00000596933 147 ntBASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 MIR6134-201ENST00000617606 109 ntBASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 MIR4727-201ENST00000622232 55 ntBASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CHMP3Q9Y3E7 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CHMP3Q9Y3E7 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CHMP3Q9Y3E7 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.6□□□□□ -1.67
CHMP3Q9Y3E7 SRP72P2-201ENST00000344851 1979 ntBASIC4.6□□□□□ -1.67
CHMP3Q9Y3E7 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.6□□□□□ -1.67
CHMP3Q9Y3E7 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CHMP3Q9Y3E7 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CHMP3Q9Y3E7 Y_RNA.136-201ENST00000363444 102 ntBASIC4.6□□□□□ -1.67
CHMP3Q9Y3E7 MIR7-3-201ENST00000384898 110 ntBASIC4.6□□□□□ -1.67
CHMP3Q9Y3E7 U3.39-201ENST00000408569 239 ntBASIC4.6□□□□□ -1.67
CHMP3Q9Y3E7 RPL26P27-201ENST00000414397 437 ntBASIC4.6□□□□□ -1.67
CHMP3Q9Y3E7 AP004242.1-201ENST00000533701 349 ntBASIC4.6□□□□□ -1.67
CHMP3Q9Y3E7 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 121.8 ms