Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.7□□□□□ -1.66
COL17A1Q9UMD9 SNORD84-203ENST00000584275 78 ntBASIC4.7□□□□□ -1.66
COL17A1Q9UMD9 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC4.7□□□□□ -1.66
COL17A1Q9UMD9 AC131238.1-201ENST00000617135 328 ntBASIC4.7□□□□□ -1.66
COL17A1Q9UMD9 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.7□□□□□ -1.66
COL17A1Q9UMD9 Y_RNA.44-201ENST00000362676 108 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 Y_RNA.143-201ENST00000363520 106 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 RNU6-1155P-201ENST00000363554 107 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 RNU6-595P-201ENST00000363944 107 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 RNU6-818P-201ENST00000364837 108 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 Y_RNA.331-201ENST00000365267 102 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 RNU6-45P-201ENST00000384471 107 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 MIR135A2-201ENST00000384854 100 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 RNU6-174P-201ENST00000410406 106 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 AL590399.6-201ENST00000446396 307 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 AL513328.1-201ENST00000446460 224 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 RNY3P16-201ENST00000516338 101 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 RNU6-911P-201ENST00000516523 104 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 RNU6-1234P-201ENST00000516877 103 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 ELOCP5-201ENST00000604924 333 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 LINC02555-201ENST00000563933 1951 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 Z75746.1-201ENST00000440243 2080 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 MTND5P9-201ENST00000503854 1755 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 RNU6-1249P-201ENST00000363237 111 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 RNU6-263P-201ENST00000363811 107 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 U8.7-201ENST00000364940 136 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 RNU6-449P-201ENST00000383914 107 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 Y_RNA.581-201ENST00000391017 97 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 AC010409.1-201ENST00000487382 476 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 RPL30P10-201ENST00000488148 337 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 RPL30P1-201ENST00000488676 339 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 AC008413.1-201ENST00000511864 177 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 SNORD116-26-201ENST00000516006 96 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 RNA5SP24-201ENST00000516478 95 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 MIR5047-201ENST00000579212 100 ntBASIC4.69□□□□□ -1.66
COL17A1Q9UMD9 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL17A1Q9UMD9 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.68□□□□□ -1.66
COL17A1Q9UMD9 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL17A1Q9UMD9 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL17A1Q9UMD9 ASNSP1-201ENST00000518311 1939 ntBASIC4.68□□□□□ -1.66
COL17A1Q9UMD9 SNORD116-14-201ENST00000383894 92 ntBASIC4.68□□□□□ -1.66
COL17A1Q9UMD9 SNORD116-17-201ENST00000383929 92 ntBASIC4.68□□□□□ -1.66
COL17A1Q9UMD9 SNORD116-15-201ENST00000384445 92 ntBASIC4.68□□□□□ -1.66
COL17A1Q9UMD9 SNORD116-20-201ENST00000384529 92 ntBASIC4.68□□□□□ -1.66
COL17A1Q9UMD9 SNORD116-19-201ENST00000384729 92 ntBASIC4.68□□□□□ -1.66
COL17A1Q9UMD9 AL592148.1-201ENST00000413568 445 ntBASIC4.68□□□□□ -1.66
COL17A1Q9UMD9 AL160275.3-201ENST00000423876 471 ntBASIC4.68□□□□□ -1.66
COL17A1Q9UMD9 AC092423.1-201ENST00000430165 186 ntBASIC4.68□□□□□ -1.66
COL17A1Q9UMD9 RNU7-138P-201ENST00000459479 64 ntBASIC4.68□□□□□ -1.66
COL17A1Q9UMD9 RN7SKP258-201ENST00000517151 304 ntBASIC4.68□□□□□ -1.66
COL17A1Q9UMD9 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC4.68□□□□□ -1.66
COL17A1Q9UMD9 MIR5582-201ENST00000579697 68 ntBASIC4.68□□□□□ -1.66
COL17A1Q9UMD9 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 Y_RNA.439-201ENST00000384119 94 ntBASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 RNU6-80P-201ENST00000384195 107 ntBASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 MIR34A-201ENST00000385130 110 ntBASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 SNORA69.1-201ENST00000390904 137 ntBASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 SNORA3.2-201ENST00000408221 125 ntBASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 PTGES3P4-201ENST00000426243 356 ntBASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 AC090774.1-201ENST00000435925 246 ntBASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 SNORD109B-201ENST00000458961 67 ntBASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 SNORD109A-201ENST00000459128 67 ntBASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 AC018437.1-201ENST00000492214 406 ntBASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 SNORD116-25-201ENST00000516517 92 ntBASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 MIR4273-201ENST00000582824 84 ntBASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 AL158827.2-201ENST00000602494 330 ntBASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 AC064859.1-201ENST00000624741 174 ntBASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 AL691447.3-201ENST00000635020 330 ntBASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL17A1Q9UMD9 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC4.66□□□□□ -1.66
COL17A1Q9UMD9 RNU6-288P-201ENST00000363690 104 ntBASIC4.66□□□□□ -1.66
COL17A1Q9UMD9 RNU6-1056P-201ENST00000383996 107 ntBASIC4.66□□□□□ -1.66
COL17A1Q9UMD9 RNU6-102P-201ENST00000384485 104 ntBASIC4.66□□□□□ -1.66
COL17A1Q9UMD9 RNU6-712P-201ENST00000410558 100 ntBASIC4.66□□□□□ -1.66
COL17A1Q9UMD9 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC4.66□□□□□ -1.66
COL17A1Q9UMD9 PPP1R11P2-201ENST00000423543 382 ntBASIC4.66□□□□□ -1.66
COL17A1Q9UMD9 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC4.66□□□□□ -1.66
COL17A1Q9UMD9 MIR2114-201ENST00000516645 80 ntBASIC4.66□□□□□ -1.66
COL17A1Q9UMD9 AP004242.1-201ENST00000533701 349 ntBASIC4.66□□□□□ -1.66
COL17A1Q9UMD9 AP002001.1-203ENST00000534002 267 ntBASIC4.66□□□□□ -1.66
COL17A1Q9UMD9 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
COL17A1Q9UMD9 AC012119.1-201ENST00000603184 222 ntBASIC4.66□□□□□ -1.66
COL17A1Q9UMD9 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC4.66□□□□□ -1.66
COL17A1Q9UMD9 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
COL17A1Q9UMD9 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC4.66□□□□□ -1.66
COL17A1Q9UMD9 MTND5P32-201ENST00000560711 1802 ntBASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms