Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.4□□□□□ -2.18
EXOSC4Q9NPD3 AC002543.1-201ENST00000299783 1954 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 RNU6-105P-201ENST00000363909 104 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 RNU6-1164P-201ENST00000364428 107 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 RNU6-692P-201ENST00000384496 107 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 RNU6-1127P-201ENST00000384580 107 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 MIR29C-201ENST00000385231 88 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 MIR320A-201ENST00000385302 82 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 RNA5SP501-201ENST00000410990 112 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 RPS15AP10-201ENST00000432472 382 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 SCARNA18-201ENST00000459004 134 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 AC008834.1-201ENST00000511612 175 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 RNU2-69P-201ENST00000516061 100 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 Y_RNA.675-201ENST00000516389 149 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 RNU6-430P-201ENST00000517078 107 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 AP005660.1-201ENST00000522972 293 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 AP001893.2-201ENST00000526949 202 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 AC022616.8-201ENST00000533569 253 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 AL356057.1-201ENST00000533798 831 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 OSBPL9P5-201ENST00000542581 171 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 AC091135.1-201ENST00000585943 307 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 AC119751.7-201ENST00000600494 245 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 AL136363.2-201ENST00000604173 851 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 AC107304.1-201ENST00000604229 296 ntBASIC1.4□□□□□ -2.19
EXOSC4Q9NPD3 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 ZNF680P1-201ENST00000436625 1469 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 MTND4P23-201ENST00000447723 1363 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 MIR126-201ENST00000362291 85 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 RNU1-62P-201ENST00000362599 164 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 Y_RNA.159-201ENST00000363674 87 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 RNU6-336P-201ENST00000364891 107 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 Y_RNA.381-201ENST00000365666 102 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 RNU6-611P-201ENST00000384276 104 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 U8.13-201ENST00000390842 128 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 RNU11-3P-201ENST00000391111 133 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 SNORA12-201ENST00000391162 147 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 RNU4-46P-201ENST00000410818 138 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 VN1R36P-201ENST00000414936 291 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 USP9YP18-201ENST00000425912 695 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 AC021146.2-201ENST00000504736 556 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 MTND2P33-201ENST00000506452 1031 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 RNU6-970P-201ENST00000516312 107 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 Y_RNA.695-201ENST00000516715 107 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 RNU6-295P-201ENST00000516901 104 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 RNU6-250P-201ENST00000516958 103 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 AK6P1-201ENST00000540219 478 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 AC023050.3-201ENST00000541142 333 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 AL158211.1-201ENST00000566763 763 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 AGGF1P4-201ENST00000568249 801 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 MIR5583-1-201ENST00000580941 59 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 Z99497.2-201ENST00000603634 310 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 AC016925.2-201ENST00000605108 242 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 AC008536.2-201ENST00000607284 349 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 MIR6845-201ENST00000613182 61 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 AC091834.1-201ENST00000614543 472 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 AC072046.2-201ENST00000618366 268 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 AC078883.4-201ENST00000623218 367 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 AC022418.1-201ENST00000624118 445 ntBASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.39□□□□□ -2.19
EXOSC4Q9NPD3 MTND5P10-201ENST00000603719 1809 ntBASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 SNORD14D-201ENST00000384390 87 ntBASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 RNU6-1222P-201ENST00000384615 107 ntBASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 BTF3L4P2-201ENST00000392798 346 ntBASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 MIR1304-201ENST00000408243 91 ntBASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 MTCYBP8-201ENST00000422855 651 ntBASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 UBE2V1P4-201ENST00000425374 344 ntBASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 HMGN2P23-201ENST00000456759 269 ntBASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 RNA5SP57-201ENST00000459463 123 ntBASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 FO393415.2-201ENST00000480085 343 ntBASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 PTP4A1P4-201ENST00000512479 322 ntBASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 AC117532.1-201ENST00000514638 323 ntBASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 RNU6-991P-201ENST00000516168 107 ntBASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 SNORA25.17-201ENST00000517184 124 ntBASIC1.38□□□□□ -2.19
EXOSC4Q9NPD3 RN7SKP256-201ENST00000517201 314 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 150.4 ms