Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AP003973.1-201ENST00000604639 691 ntBASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 RNU6-116P-201ENST00000384042 109 ntBASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 MTND1P14-201ENST00000427400 950 ntBASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 RNU7-23P-201ENST00000459465 62 ntBASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 RNU5F-8P-201ENST00000515941 111 ntBASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 AC023050.3-201ENST00000541142 333 ntBASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 AP001330.4-201ENST00000604350 154 ntBASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 AL109659.3-201ENST00000624985 950 ntBASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 RNU4-79P-201ENST00000362764 141 ntBASIC-0.97□□□□□ -2.56
VPS13AQ96RL7 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC-0.97□□□□□ -2.56
VPS13AQ96RL7 RAP1BP3-201ENST00000407180 549 ntBASIC-0.97□□□□□ -2.56
VPS13AQ96RL7 OR51AB1P-201ENST00000429046 620 ntBASIC-0.97□□□□□ -2.56
VPS13AQ96RL7 U7.7-201ENST00000459276 60 ntBASIC-0.97□□□□□ -2.56
VPS13AQ96RL7 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC-0.97□□□□□ -2.56
VPS13AQ96RL7 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC-0.97□□□□□ -2.56
VPS13AQ96RL7 RNA5SP470-201ENST00000516463 106 ntBASIC-0.97□□□□□ -2.56
VPS13AQ96RL7 AC125611.1-201ENST00000549563 229 ntBASIC-0.97□□□□□ -2.56
VPS13AQ96RL7 TUG1_2.1-201ENST00000614234 87 ntBASIC-0.97□□□□□ -2.56
VPS13AQ96RL7 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC-0.97□□□□□ -2.57
VPS13AQ96RL7 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC-0.97□□□□□ -2.57
VPS13AQ96RL7 RNU6-414P-201ENST00000363705 104 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 BTF3P8-201ENST00000414577 526 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 RPL31P20-201ENST00000449593 360 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 AC117525.1-201ENST00000515228 503 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 AC004852.3-201ENST00000614131 326 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 RNU6-1322P-201ENST00000364309 107 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 Y_RNA.421-201ENST00000384052 101 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 RNU6-910P-201ENST00000390844 107 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 AL449283.1-202ENST00000418249 604 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 MTCO3P10-201ENST00000455912 772 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 RPL31P53-201ENST00000457065 348 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 RNA5SP503-201ENST00000517047 117 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 ZNF736P9Y-201ENST00000439586 1345 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 AL359854.1-201ENST00000614203 1594 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 SNORD115-2-201ENST00000362842 82 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 RNU6-1280P-201ENST00000365211 107 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 RNU6-969P-201ENST00000383900 105 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 AC116562.3-201ENST00000506136 177 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 ARL2BPP5-201ENST00000523141 481 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 uc_338.15-201ENST00000615470 191 ntBASIC-0.98□□□□□ -2.57
VPS13AQ96RL7 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 AC087499.4-201ENST00000448505 178 ntBASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 AC022861.1-201ENST00000522981 663 ntBASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 AF038458.1-201ENST00000588406 262 ntBASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 AP002906.1-201ENST00000603405 233 ntBASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 AC242628.1-201ENST00000606810 391 ntBASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 CBX3P9-201ENST00000402326 552 ntBASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 MTCO2P31-201ENST00000402702 684 ntBASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 MTCYBP3-201ENST00000445588 1137 ntBASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 AC048334.1-201ENST00000477975 159 ntBASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 RNA5SP268-201ENST00000516828 124 ntBASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 AC090572.1-201ENST00000519251 160 ntBASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 AC013468.1-201ENST00000608680 598 ntBASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 AC011939.3-201ENST00000613686 466 ntBASIC-0.99□□□□□ -2.57
VPS13AQ96RL7 SNORA48.1-201ENST00000390879 135 ntBASIC-1□□□□□ -2.57
VPS13AQ96RL7 MIR7157-201ENST00000635801 60 ntBASIC-1□□□□□ -2.57
VPS13AQ96RL7 ZNF736P6Y-201ENST00000447526 1213 ntBASIC-1□□□□□ -2.57
VPS13AQ96RL7 HMGB1P28-201ENST00000507778 552 ntBASIC-1□□□□□ -2.57
VPS13AQ96RL7 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC-1□□□□□ -2.57
VPS13AQ96RL7 AC002400.1-201ENST00000569310 726 ntBASIC-1□□□□□ -2.57
VPS13AQ96RL7 Y_RNA.232-201ENST00000364369 96 ntBASIC-1□□□□□ -2.57
VPS13AQ96RL7 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC-1□□□□□ -2.57
VPS13AQ96RL7 NDUFS5P1-201ENST00000405668 289 ntBASIC-1□□□□□ -2.57
VPS13AQ96RL7 C1DP1-201ENST00000426049 402 ntBASIC-1□□□□□ -2.57
VPS13AQ96RL7 AC005094.1-201ENST00000440420 368 ntBASIC-1□□□□□ -2.57
VPS13AQ96RL7 MTND1P17-201ENST00000448961 204 ntBASIC-1□□□□□ -2.57
VPS13AQ96RL7 ABBA01006766.1-201ENST00000584728 294 ntBASIC-1□□□□□ -2.57
VPS13AQ96RL7 Y_RNA.778-201ENST00000620203 90 ntBASIC-1□□□□□ -2.57
VPS13AQ96RL7 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC-1.01□□□□□ -2.57
VPS13AQ96RL7 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC-1.01□□□□□ -2.57
VPS13AQ96RL7 RNU6-1067P-201ENST00000384752 107 ntBASIC-1.01□□□□□ -2.57
VPS13AQ96RL7 UBE2V1P10-201ENST00000414685 269 ntBASIC-1.01□□□□□ -2.57
VPS13AQ96RL7 USP9YP25-201ENST00000457708 443 ntBASIC-1.01□□□□□ -2.57
VPS13AQ96RL7 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC-1.01□□□□□ -2.57
VPS13AQ96RL7 AC005951.2-201ENST00000576282 495 ntBASIC-1.01□□□□□ -2.57
VPS13AQ96RL7 MIR5591-201ENST00000578248 65 ntBASIC-1.01□□□□□ -2.57
VPS13AQ96RL7 AC068792.1-201ENST00000621354 417 ntBASIC-1.01□□□□□ -2.57
VPS13AQ96RL7 MIR8063-201ENST00000621930 81 ntBASIC-1.01□□□□□ -2.57
VPS13AQ96RL7 Y_RNA.172-201ENST00000363765 102 ntBASIC-1.01□□□□□ -2.57
VPS13AQ96RL7 RNU2-59P-201ENST00000410482 191 ntBASIC-1.01□□□□□ -2.57
VPS13AQ96RL7 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC-1.01□□□□□ -2.57
VPS13AQ96RL7 RNU1-39P-201ENST00000383897 165 ntBASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 MTCYBP34-201ENST00000439552 670 ntBASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 AC008628.1-201ENST00000508663 265 ntBASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 MIR4306-201ENST00000583390 91 ntBASIC-1.02□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms