Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 SNORA16.1-201ENST00000364597 132 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 RNU5A-6P-201ENST00000384136 116 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 RPS29P13-201ENST00000402041 169 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 RN7SKP223-201ENST00000410582 62 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 RNU4-55P-201ENST00000410731 137 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 RNU6-293P-201ENST00000411259 106 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 Z98742.3-201ENST00000418637 326 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 RNU7-63P-201ENST00000459054 62 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 RNU7-167P-201ENST00000459160 62 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 AL163973.1-201ENST00000484753 577 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 RNA5SP182-201ENST00000516064 82 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 RNA5SP137-201ENST00000516833 135 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 RNU6-835P-201ENST00000516974 104 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 RNU6-667P-201ENST00000517186 102 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 AC104383.1-201ENST00000530297 370 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 AC103996.1-201ENST00000555468 102 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 AC087683.1-201ENST00000591187 441 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 AP001330.5-201ENST00000607176 411 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 AC063943.3-201ENST00000615562 356 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 uc_338.11-201ENST00000619132 160 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 YWHAEP7-203ENST00000622054 312 ntBASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.63□□□□□ -2.15
CCDC54Q8NEL0 WWP1P1-201ENST00000466609 2769 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 RNU4-15P-201ENST00000362613 141 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 Y_RNA.255-201ENST00000364581 97 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 U3.13-201ENST00000364804 214 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 RNU6-43P-201ENST00000384302 107 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 SNORD73A-201ENST00000386062 65 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 AL023284.1-201ENST00000403956 276 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 MIR1283-2-201ENST00000408621 87 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 AL365400.1-201ENST00000431854 640 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 AL139415.2-201ENST00000431968 163 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 RPS15AP10-201ENST00000432472 382 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 SNAP23P1-201ENST00000433229 246 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 Z83846.1-201ENST00000446798 265 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 PPP1R2P5-201ENST00000457256 603 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 CYP2C59P-201ENST00000457790 269 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 SNRPFP3-201ENST00000457792 225 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 RPL39P5-202ENST00000512505 151 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 RNU6-965P-201ENST00000516721 96 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 COPS8P3-201ENST00000526024 482 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 MIR3618-201ENST00000580330 88 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 MIR4435-1-201ENST00000582552 80 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 AC064859.1-201ENST00000624741 174 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 AC090517.3-201ENST00000625170 141 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 MIR1248-201ENST00000629190 106 ntBASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
CCDC54Q8NEL0 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 RNU6-527P-201ENST00000363425 104 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 Y_RNA.296-201ENST00000364930 108 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 RNA5SP240-201ENST00000365355 128 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 RNU6-827P-201ENST00000365553 106 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 RNU6-259P-201ENST00000383999 107 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 RNU6-38P-201ENST00000384085 107 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 MIR634-201ENST00000385208 97 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 MIR561-201ENST00000385216 97 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 SNORA12-201ENST00000391162 147 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 RNU2-32P-201ENST00000411193 191 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 RNA5SP450-201ENST00000411206 102 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 AL158823.1-201ENST00000418441 478 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 USP9YP18-201ENST00000425912 695 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 DLGAP5P1-201ENST00000430307 464 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 IFNA20P-201ENST00000436840 528 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 RNU6-333P-201ENST00000459117 107 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 RNU6-261P-201ENST00000459506 102 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 SNORA31.16-201ENST00000516773 139 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 AC024614.2-201ENST00000577584 372 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 AL078605.1-201ENST00000603529 500 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 AC091805.2-201ENST00000603848 235 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 AC092954.2-201ENST00000609103 430 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 AC004908.3-201ENST00000610248 625 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 AC068944.2-201ENST00000610373 403 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 AL773524.1-201ENST00000614065 229 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 AL359314.1-201ENST00000616913 261 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 129.2 ms