Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
DEPDC4Q8N2C3 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 SNORA72.4-201ENST00000384174 132 ntBASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 Y_RNA.456-201ENST00000384232 111 ntBASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 Y_RNA.488-201ENST00000384403 102 ntBASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 AL357075.1-201ENST00000404107 726 ntBASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 AC114755.2-201ENST00000413520 361 ntBASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 SEPT7P4-201ENST00000437076 306 ntBASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 AL135790.2-201ENST00000437701 267 ntBASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 RPL36AP48-201ENST00000485521 314 ntBASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 SRIP1-201ENST00000489235 288 ntBASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 AC008897.1-201ENST00000494006 347 ntBASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 RNU1-117P-201ENST00000517041 158 ntBASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 IGKV1-32-201ENST00000519290 311 ntBASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 RPL23AP97-201ENST00000568955 471 ntBASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 AC091042.1-201ENST00000579213 173 ntBASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 MIR5688-201ENST00000580619 83 ntBASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 AC008745.1-201ENST00000604064 271 ntBASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 AL391261.4-201ENST00000616012 481 ntBASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
DEPDC4Q8N2C3 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 RNU6-899P-201ENST00000363947 107 ntBASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 AP002088.1-201ENST00000382740 395 ntBASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 Y_RNA.497-201ENST00000384447 98 ntBASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 Y_RNA.568-201ENST00000384742 113 ntBASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 RNU6-239P-201ENST00000390990 99 ntBASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 SNORA26.5-201ENST00000391215 123 ntBASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 AL162725.1-201ENST00000435405 301 ntBASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 AC112771.1-201ENST00000463581 102 ntBASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 RN7SL459P-201ENST00000481078 302 ntBASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 AC006445.1-201ENST00000491925 405 ntBASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 SNORA70.12-201ENST00000516084 153 ntBASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 RNU1-6P-201ENST00000516290 144 ntBASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 MIR4737-201ENST00000583979 81 ntBASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 AC087385.3-201ENST00000620477 187 ntBASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 GABRG2-229ENST00000641017 3628 ntBASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
DEPDC4Q8N2C3 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 SNORD114-7-201ENST00000362520 77 ntBASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 RNA5SP307-201ENST00000362863 116 ntBASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 SNORA8.3-201ENST00000384679 139 ntBASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 MIR626-201ENST00000385032 94 ntBASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 MIR586-201ENST00000385035 97 ntBASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 MIR3065-201ENST00000390137 79 ntBASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 RNA5SP252-201ENST00000391131 119 ntBASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 AC004552.1-201ENST00000419089 348 ntBASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 AC146507.2-201ENST00000460608 476 ntBASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 RPS26P3-201ENST00000470205 348 ntBASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 AC090543.2-201ENST00000483963 348 ntBASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 AC004057.1-201ENST00000485827 348 ntBASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 AC015795.1-201ENST00000513669 327 ntBASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 Y_RNA.797-201ENST00000515977 94 ntBASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 RNA5SP154-201ENST00000516193 111 ntBASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 AC091905.2-201ENST00000623143 306 ntBASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 U6.115-201ENST00000636045 103 ntBASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
DEPDC4Q8N2C3 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.24□□□□□ -1.73
DEPDC4Q8N2C3 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
DEPDC4Q8N2C3 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.24□□□□□ -1.73
DEPDC4Q8N2C3 RNU6-1027P-201ENST00000383998 107 ntBASIC4.24□□□□□ -1.73
DEPDC4Q8N2C3 RNU1-44P-201ENST00000384453 163 ntBASIC4.24□□□□□ -1.73
DEPDC4Q8N2C3 RPS16P5-201ENST00000406501 404 ntBASIC4.24□□□□□ -1.73
DEPDC4Q8N2C3 RNU6-1077P-201ENST00000410506 102 ntBASIC4.24□□□□□ -1.73
DEPDC4Q8N2C3 AL139281.1-201ENST00000422120 335 ntBASIC4.24□□□□□ -1.73
DEPDC4Q8N2C3 DNAJC19P7-201ENST00000428811 344 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms