Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RNU6-418P-201ENST00000384035 107 ntBASIC0.5□□□□□ -2.33
USP54Q70EL1 MIR19B1-201ENST00000384829 87 ntBASIC0.5□□□□□ -2.33
USP54Q70EL1 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.5□□□□□ -2.33
USP54Q70EL1 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC0.5□□□□□ -2.33
USP54Q70EL1 GTF2IP13-201ENST00000438487 386 ntBASIC0.5□□□□□ -2.33
USP54Q70EL1 SNORA70.22-201ENST00000517160 124 ntBASIC0.5□□□□□ -2.33
USP54Q70EL1 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC0.5□□□□□ -2.33
USP54Q70EL1 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC0.5□□□□□ -2.33
USP54Q70EL1 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.5□□□□□ -2.33
USP54Q70EL1 DPPA3P3-201ENST00000603842 430 ntBASIC0.5□□□□□ -2.33
USP54Q70EL1 AL590240.4-201ENST00000616908 390 ntBASIC0.5□□□□□ -2.33
USP54Q70EL1 MIR6759-201ENST00000638110 65 ntBASIC0.5□□□□□ -2.33
USP54Q70EL1 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
USP54Q70EL1 RNU6-744P-201ENST00000365557 107 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 RNU6-1316P-201ENST00000384242 108 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.49□□□□□ -2.33
USP54Q70EL1 AL359634.1-202ENST00000404721 284 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 RNU6-1025P-201ENST00000410629 104 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC0.49□□□□□ -2.33
USP54Q70EL1 TXNL1P1-201ENST00000429528 554 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 AL606517.1-201ENST00000446914 387 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.49□□□□□ -2.33
USP54Q70EL1 AC104629.1-201ENST00000494226 508 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 AL512347.1-201ENST00000566420 503 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 AC068790.6-201ENST00000602558 258 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 AC004492.1-201ENST00000607036 742 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 AL365434.2-201ENST00000607979 234 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 MIR6718-201ENST00000616153 80 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 AC010615.1-201ENST00000594254 1764 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.49□□□□□ -2.33
USP54Q70EL1 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC0.49□□□□□ -2.33
USP54Q70EL1 RNU6-792P-201ENST00000363490 107 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 RNU6-289P-201ENST00000364093 107 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 RNU6-1065P-201ENST00000384513 106 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 SNORD116-20-201ENST00000384529 92 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 RNU6-1176P-201ENST00000390955 107 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC0.49□□□□□ -2.33
USP54Q70EL1 AC099677.2-201ENST00000436385 175 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC0.49□□□□□ -2.33
USP54Q70EL1 AC093899.1-201ENST00000457984 376 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 RNU6-953P-201ENST00000459154 107 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 AC097473.1-201ENST00000508142 408 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC0.49□□□□□ -2.33
USP54Q70EL1 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC0.49□□□□□ -2.33
USP54Q70EL1 DEFB108A-201ENST00000530110 222 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC0.49□□□□□ -2.33
USP54Q70EL1 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.49□□□□□ -2.33
USP54Q70EL1 AC092325.1-201ENST00000566449 554 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 MIR3664-201ENST00000579074 99 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 MIR5708-201ENST00000579723 85 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 MTCO2P2-201ENST00000591258 225 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.49□□□□□ -2.33
USP54Q70EL1 AC022022.2-201ENST00000602989 360 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 AL021879.1-201ENST00000611756 288 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 AC084824.5-201ENST00000612009 413 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 AL365204.3-201ENST00000612448 685 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 AC063943.3-201ENST00000615562 356 ntBASIC0.49□□□□□ -2.33
USP54Q70EL1 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC0.48□□□□□ -2.33
USP54Q70EL1 SNORD3E-201ENST00000362899 217 ntBASIC0.48□□□□□ -2.33
USP54Q70EL1 MIR19A-201ENST00000384878 82 ntBASIC0.48□□□□□ -2.33
USP54Q70EL1 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.48□□□□□ -2.33
USP54Q70EL1 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.48□□□□□ -2.33
USP54Q70EL1 MRPL35P1-201ENST00000404272 572 ntBASIC0.48□□□□□ -2.33
USP54Q70EL1 AC006461.1-201ENST00000412637 326 ntBASIC0.48□□□□□ -2.33
USP54Q70EL1 MRPS36P1-201ENST00000421291 307 ntBASIC0.48□□□□□ -2.33
USP54Q70EL1 AL365338.1-201ENST00000422282 858 ntBASIC0.48□□□□□ -2.33
USP54Q70EL1 AL627311.1-201ENST00000431514 115 ntBASIC0.48□□□□□ -2.33
USP54Q70EL1 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC0.48□□□□□ -2.33
USP54Q70EL1 MTND1P3-201ENST00000484956 952 ntBASIC0.48□□□□□ -2.33
USP54Q70EL1 AC145146.1-201ENST00000496370 254 ntBASIC0.48□□□□□ -2.33
USP54Q70EL1 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC0.48□□□□□ -2.33
USP54Q70EL1 AC104072.1-201ENST00000568817 668 ntBASIC0.48□□□□□ -2.33
USP54Q70EL1 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.48□□□□□ -2.33
USP54Q70EL1 AC097460.3-201ENST00000623099 442 ntBASIC0.48□□□□□ -2.33
USP54Q70EL1 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.48□□□□□ -2.33
USP54Q70EL1 RNU6-236P-201ENST00000363886 106 ntBASIC0.47□□□□□ -2.33
USP54Q70EL1 Y_RNA.274-201ENST00000364714 101 ntBASIC0.47□□□□□ -2.33
USP54Q70EL1 SNORD114-24-201ENST00000365029 72 ntBASIC0.47□□□□□ -2.33
USP54Q70EL1 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC0.47□□□□□ -2.33
USP54Q70EL1 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.47□□□□□ -2.33
USP54Q70EL1 MIR100-201ENST00000385259 80 ntBASIC0.47□□□□□ -2.33
USP54Q70EL1 AL590556.1-201ENST00000423231 483 ntBASIC0.47□□□□□ -2.33
USP54Q70EL1 AL158053.1-201ENST00000441503 453 ntBASIC0.47□□□□□ -2.33
USP54Q70EL1 EEF1E1P1-201ENST00000446998 430 ntBASIC0.47□□□□□ -2.33
USP54Q70EL1 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC0.47□□□□□ -2.33
USP54Q70EL1 PAXBP1P1-201ENST00000449315 447 ntBASIC0.47□□□□□ -2.33
USP54Q70EL1 RPS27AP8-201ENST00000452665 445 ntBASIC0.47□□□□□ -2.33
USP54Q70EL1 SNORD124-201ENST00000459577 104 ntBASIC0.47□□□□□ -2.33
USP54Q70EL1 RNA5SP481-201ENST00000516814 122 ntBASIC0.47□□□□□ -2.33
USP54Q70EL1 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC0.47□□□□□ -2.33
USP54Q70EL1 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.47□□□□□ -2.33
USP54Q70EL1 AC104417.1-201ENST00000523974 751 ntBASIC0.47□□□□□ -2.33
USP54Q70EL1 AC008751.2-201ENST00000597885 980 ntBASIC0.47□□□□□ -2.33
USP54Q70EL1 BNIP3P30-201ENST00000601184 574 ntBASIC0.47□□□□□ -2.33
USP54Q70EL1 AC007363.1-201ENST00000604736 620 ntBASIC0.47□□□□□ -2.33
USP54Q70EL1 AC090578.1-201ENST00000604955 591 ntBASIC0.47□□□□□ -2.33
USP54Q70EL1 AC106800.4-201ENST00000614905 153 ntBASIC0.47□□□□□ -2.33
USP54Q70EL1 AL356094.1-201ENST00000624663 1212 ntBASIC0.47□□□□□ -2.33
USP54Q70EL1 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.47□□□□□ -2.33
USP54Q70EL1 MTND5P33-201ENST00000571250 1450 ntBASIC0.47□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms