Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC130289.1-201ENST00000577321 73 ntBASIC3.98□□□□□ -1.77
LIG3P49916 AC091167.4-201ENST00000605079 184 ntBASIC3.98□□□□□ -1.77
LIG3P49916 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
LIG3P49916 AC127459.3-201ENST00000624328 466 ntBASIC3.98□□□□□ -1.77
LIG3P49916 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.98□□□□□ -1.77
LIG3P49916 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.98□□□□□ -1.77
LIG3P49916 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.98□□□□□ -1.77
LIG3P49916 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
LIG3P49916 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.97□□□□□ -1.77
LIG3P49916 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.97□□□□□ -1.77
LIG3P49916 RNU6-873P-201ENST00000363833 107 ntBASIC3.97□□□□□ -1.77
LIG3P49916 RNA5SP399-201ENST00000364003 117 ntBASIC3.97□□□□□ -1.77
LIG3P49916 RNU4-56P-201ENST00000364700 142 ntBASIC3.97□□□□□ -1.77
LIG3P49916 RNU2-14P-201ENST00000411053 191 ntBASIC3.97□□□□□ -1.77
LIG3P49916 AL390729.2-201ENST00000416137 156 ntBASIC3.97□□□□□ -1.77
LIG3P49916 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.97□□□□□ -1.77
LIG3P49916 AC090525.1-201ENST00000479116 478 ntBASIC3.97□□□□□ -1.77
LIG3P49916 SNORA31.16-201ENST00000516773 139 ntBASIC3.97□□□□□ -1.77
LIG3P49916 SNORA81.3-201ENST00000517283 198 ntBASIC3.97□□□□□ -1.77
LIG3P49916 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.97□□□□□ -1.77
LIG3P49916 MIR4423-201ENST00000580922 80 ntBASIC3.97□□□□□ -1.77
LIG3P49916 MIR3136-201ENST00000583498 78 ntBASIC3.97□□□□□ -1.77
LIG3P49916 AC091152.3-201ENST00000604227 325 ntBASIC3.97□□□□□ -1.77
LIG3P49916 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.97□□□□□ -1.77
LIG3P49916 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
LIG3P49916 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
LIG3P49916 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
LIG3P49916 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
LIG3P49916 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
LIG3P49916 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.97□□□□□ -1.77
LIG3P49916 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
LIG3P49916 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.96□□□□□ -1.77
LIG3P49916 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.96□□□□□ -1.77
LIG3P49916 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.96□□□□□ -1.77
LIG3P49916 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
LIG3P49916 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.96□□□□□ -1.78
LIG3P49916 RNU6-213P-201ENST00000384051 104 ntBASIC3.96□□□□□ -1.78
LIG3P49916 MIR1251-201ENST00000408552 70 ntBASIC3.96□□□□□ -1.78
LIG3P49916 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.96□□□□□ -1.78
LIG3P49916 CYCSP48-201ENST00000417124 323 ntBASIC3.96□□□□□ -1.78
LIG3P49916 PIGPP3-201ENST00000425307 415 ntBASIC3.96□□□□□ -1.78
LIG3P49916 AC112220.1-201ENST00000434628 355 ntBASIC3.96□□□□□ -1.78
LIG3P49916 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.96□□□□□ -1.78
LIG3P49916 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.96□□□□□ -1.78
LIG3P49916 AC117440.1-201ENST00000474107 571 ntBASIC3.96□□□□□ -1.78
LIG3P49916 GZMAP1-201ENST00000503054 631 ntBASIC3.96□□□□□ -1.78
LIG3P49916 MIR4738-201ENST00000579134 87 ntBASIC3.96□□□□□ -1.78
LIG3P49916 MIR4425-201ENST00000580572 84 ntBASIC3.96□□□□□ -1.78
LIG3P49916 AL078605.1-201ENST00000603529 500 ntBASIC3.96□□□□□ -1.78
LIG3P49916 RNU6-91P-201ENST00000607774 107 ntBASIC3.96□□□□□ -1.78
LIG3P49916 AC010999.1-201ENST00000611856 324 ntBASIC3.96□□□□□ -1.78
LIG3P49916 AC068831.7-201ENST00000616954 363 ntBASIC3.96□□□□□ -1.78
LIG3P49916 SNORD98-201ENST00000636377 67 ntBASIC3.96□□□□□ -1.78
LIG3P49916 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
LIG3P49916 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.96□□□□□ -1.78
LIG3P49916 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
LIG3P49916 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.95□□□□□ -1.78
LIG3P49916 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
LIG3P49916 Y_RNA.29-201ENST00000362570 113 ntBASIC3.95□□□□□ -1.78
LIG3P49916 RNU6-626P-201ENST00000363354 107 ntBASIC3.95□□□□□ -1.78
LIG3P49916 Y_RNA.230-201ENST00000364348 109 ntBASIC3.95□□□□□ -1.78
LIG3P49916 Y_RNA.269-201ENST00000364685 89 ntBASIC3.95□□□□□ -1.78
LIG3P49916 Y_RNA.297-201ENST00000364950 91 ntBASIC3.95□□□□□ -1.78
LIG3P49916 RNU6-326P-201ENST00000365480 107 ntBASIC3.95□□□□□ -1.78
LIG3P49916 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
LIG3P49916 RNU4-30P-201ENST00000410245 143 ntBASIC3.95□□□□□ -1.78
LIG3P49916 Y_RNA.595-201ENST00000410403 105 ntBASIC3.95□□□□□ -1.78
LIG3P49916 RNU6-1140P-201ENST00000410517 106 ntBASIC3.95□□□□□ -1.78
LIG3P49916 RNU2-49P-201ENST00000410666 184 ntBASIC3.95□□□□□ -1.78
LIG3P49916 RNA5SP38-201ENST00000410750 119 ntBASIC3.95□□□□□ -1.78
LIG3P49916 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.95□□□□□ -1.78
LIG3P49916 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.95□□□□□ -1.78
LIG3P49916 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.95□□□□□ -1.78
LIG3P49916 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.95□□□□□ -1.78
LIG3P49916 SUMO1P2-201ENST00000452524 304 ntBASIC3.95□□□□□ -1.78
LIG3P49916 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.95□□□□□ -1.78
LIG3P49916 SNORA40.9-201ENST00000515895 93 ntBASIC3.95□□□□□ -1.78
LIG3P49916 RNU2-31P-201ENST00000516954 155 ntBASIC3.95□□□□□ -1.78
LIG3P49916 YPEL5P3-201ENST00000547227 352 ntBASIC3.95□□□□□ -1.78
LIG3P49916 RRN3P3-201ENST00000549207 578 ntBASIC3.95□□□□□ -1.78
LIG3P49916 CYP4A27P-201ENST00000567218 190 ntBASIC3.95□□□□□ -1.78
LIG3P49916 MIR5047-201ENST00000579212 100 ntBASIC3.95□□□□□ -1.78
LIG3P49916 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.95□□□□□ -1.78
LIG3P49916 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.95□□□□□ -1.78
LIG3P49916 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
LIG3P49916 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.95□□□□□ -1.78
LIG3P49916 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.94□□□□□ -1.78
LIG3P49916 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
LIG3P49916 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.94□□□□□ -1.78
LIG3P49916 CEP170P1-201ENST00000502249 4587 ntBASIC3.94□□□□□ -1.78
LIG3P49916 Y_RNA.200-201ENST00000364018 102 ntBASIC3.94□□□□□ -1.78
LIG3P49916 RNU6-20P-201ENST00000384106 107 ntBASIC3.94□□□□□ -1.78
LIG3P49916 Y_RNA.570-201ENST00000384750 101 ntBASIC3.94□□□□□ -1.78
LIG3P49916 MIR134-201ENST00000385258 73 ntBASIC3.94□□□□□ -1.78
LIG3P49916 AC138623.1-201ENST00000418060 216 ntBASIC3.94□□□□□ -1.78
LIG3P49916 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.94□□□□□ -1.78
LIG3P49916 AIG1P1-201ENST00000503376 148 ntBASIC3.94□□□□□ -1.78
LIG3P49916 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.94□□□□□ -1.78
LIG3P49916 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.94□□□□□ -1.78
LIG3P49916 MIR5685-201ENST00000579080 79 ntBASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms