Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PRPS1P1-201ENST00000445305 876 ntBASIC2.08□□□□□ -2.08
PTPN4P29074 RNU6-261P-201ENST00000459506 102 ntBASIC2.08□□□□□ -2.08
PTPN4P29074 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.08□□□□□ -2.08
PTPN4P29074 RNA5SP200-201ENST00000516360 103 ntBASIC2.08□□□□□ -2.08
PTPN4P29074 RNU6-506P-201ENST00000516553 94 ntBASIC2.08□□□□□ -2.08
PTPN4P29074 RNU6-586P-201ENST00000517265 104 ntBASIC2.08□□□□□ -2.08
PTPN4P29074 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.08□□□□□ -2.08
PTPN4P29074 uc_338.34-201ENST00000617467 174 ntBASIC2.08□□□□□ -2.08
PTPN4P29074 AC098657.3-201ENST00000620434 263 ntBASIC2.08□□□□□ -2.08
PTPN4P29074 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
PTPN4P29074 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
PTPN4P29074 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.07□□□□□ -2.08
PTPN4P29074 RNU6-78P-201ENST00000362897 107 ntBASIC2.07□□□□□ -2.08
PTPN4P29074 RNU6-1159P-201ENST00000362933 107 ntBASIC2.07□□□□□ -2.08
PTPN4P29074 RNU1-72P-201ENST00000362976 153 ntBASIC2.07□□□□□ -2.08
PTPN4P29074 Y_RNA.324-201ENST00000365165 102 ntBASIC2.07□□□□□ -2.08
PTPN4P29074 SNORA69-201ENST00000383895 132 ntBASIC2.07□□□□□ -2.08
PTPN4P29074 CBX3P9-201ENST00000402326 552 ntBASIC2.07□□□□□ -2.08
PTPN4P29074 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.07□□□□□ -2.08
PTPN4P29074 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.07□□□□□ -2.08
PTPN4P29074 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.07□□□□□ -2.08
PTPN4P29074 CCDC34P1-201ENST00000507441 517 ntBASIC2.07□□□□□ -2.08
PTPN4P29074 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.07□□□□□ -2.08
PTPN4P29074 MTCYBP40-201ENST00000509390 1135 ntBASIC2.07□□□□□ -2.08
PTPN4P29074 RNU6-835P-201ENST00000516974 104 ntBASIC2.07□□□□□ -2.08
PTPN4P29074 AC069113.1-201ENST00000517763 267 ntBASIC2.07□□□□□ -2.08
PTPN4P29074 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.07□□□□□ -2.08
PTPN4P29074 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.07□□□□□ -2.08
PTPN4P29074 IMMP1LP2-201ENST00000552954 492 ntBASIC2.07□□□□□ -2.08
PTPN4P29074 ANP32BP3-201ENST00000559213 706 ntBASIC2.07□□□□□ -2.08
PTPN4P29074 AL031274.2-201ENST00000599419 203 ntBASIC2.07□□□□□ -2.08
PTPN4P29074 AC139792.2-201ENST00000624218 587 ntBASIC2.07□□□□□ -2.08
PTPN4P29074 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
PTPN4P29074 Y_RNA.3-201ENST00000362331 103 ntBASIC2.06□□□□□ -2.08
PTPN4P29074 SNORA16B-201ENST00000364674 135 ntBASIC2.06□□□□□ -2.08
PTPN4P29074 SNORA25B-201ENST00000365507 128 ntBASIC2.06□□□□□ -2.08
PTPN4P29074 Y_RNA.372-201ENST00000365599 102 ntBASIC2.06□□□□□ -2.08
PTPN4P29074 MIR29B2-201ENST00000385055 81 ntBASIC2.06□□□□□ -2.08
PTPN4P29074 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
PTPN4P29074 AL606923.1-201ENST00000406616 190 ntBASIC2.06□□□□□ -2.08
PTPN4P29074 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.06□□□□□ -2.08
PTPN4P29074 AL591806.2-201ENST00000433122 173 ntBASIC2.06□□□□□ -2.08
PTPN4P29074 MTND3P21-201ENST00000433774 331 ntBASIC2.06□□□□□ -2.08
PTPN4P29074 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.06□□□□□ -2.08
PTPN4P29074 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.06□□□□□ -2.08
PTPN4P29074 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.06□□□□□ -2.08
PTPN4P29074 AP001025.1-201ENST00000486139 332 ntBASIC2.06□□□□□ -2.08
PTPN4P29074 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.06□□□□□ -2.08
PTPN4P29074 RN7SL274P-201ENST00000492268 272 ntBASIC2.06□□□□□ -2.08
PTPN4P29074 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.06□□□□□ -2.08
PTPN4P29074 SNORA25.17-201ENST00000517184 124 ntBASIC2.06□□□□□ -2.08
PTPN4P29074 RN7SKP256-201ENST00000517201 314 ntBASIC2.06□□□□□ -2.08
PTPN4P29074 AC115990.1-201ENST00000526957 301 ntBASIC2.06□□□□□ -2.08
PTPN4P29074 AK6P1-201ENST00000540219 478 ntBASIC2.06□□□□□ -2.08
PTPN4P29074 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.06□□□□□ -2.08
PTPN4P29074 AL512360.1-201ENST00000555346 234 ntBASIC2.06□□□□□ -2.08
PTPN4P29074 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.06□□□□□ -2.08
PTPN4P29074 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.06□□□□□ -2.08
PTPN4P29074 AF250324.2-201ENST00000608299 610 ntBASIC2.06□□□□□ -2.08
PTPN4P29074 U4.7-201ENST00000638126 106 ntBASIC2.06□□□□□ -2.08
PTPN4P29074 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.06□□□□□ -2.08
PTPN4P29074 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
PTPN4P29074 AC009487.4-201ENST00000624969 3585 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 SNORD56.1-201ENST00000362913 68 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 RNU6-527P-201ENST00000363425 104 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 SNORA67.3-201ENST00000384366 140 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 AL512604.1-201ENST00000404812 257 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 RNU6-648P-201ENST00000410190 107 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 RNU2-40P-201ENST00000410833 196 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.05□□□□□ -2.08
PTPN4P29074 AC008267.5-201ENST00000424928 265 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.05□□□□□ -2.08
PTPN4P29074 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.05□□□□□ -2.08
PTPN4P29074 RNU7-167P-201ENST00000459160 62 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 AC108210.2-201ENST00000503681 201 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.05□□□□□ -2.08
PTPN4P29074 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.05□□□□□ -2.08
PTPN4P29074 SNORA4.4-201ENST00000515921 135 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 RNU6-377P-201ENST00000515965 102 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 SCARNA16.3-201ENST00000516595 184 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 MTND4P7-201ENST00000523876 130 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 AC016957.1-201ENST00000534895 309 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 AC015712.3-201ENST00000559380 164 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 HMGB1P33-201ENST00000563485 527 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC2.05□□□□□ -2.08
PTPN4P29074 VN1R107P-201ENST00000601784 209 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 AC005034.5-201ENST00000604219 466 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 AC002044.1-201ENST00000606707 158 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
PTPN4P29074 AC241585.2-209ENST00000638217 143 ntBASIC2.05□□□□□ -2.08
PTPN4P29074 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.05□□□□□ -2.08
PTPN4P29074 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.05□□□□□ -2.08
PTPN4P29074 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.05□□□□□ -2.08
PTPN4P29074 RNU6-266P-201ENST00000364225 107 ntBASIC2.04□□□□□ -2.08
PTPN4P29074 RNU6-1222P-201ENST00000384615 107 ntBASIC2.04□□□□□ -2.08
PTPN4P29074 AL590556.1-201ENST00000423231 483 ntBASIC2.04□□□□□ -2.08
PTPN4P29074 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
PTPN4P29074 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.04□□□□□ -2.08
PTPN4P29074 AL121594.1-201ENST00000475906 575 ntBASIC2.04□□□□□ -2.08
PTPN4P29074 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 164.8 ms