Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
MSX1P28360 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.18□□□□□ -1.74
MSX1P28360 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
MSX1P28360 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
MSX1P28360 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.18□□□□□ -1.74
MSX1P28360 U3.9-201ENST00000363823 204 ntBASIC4.18□□□□□ -1.74
MSX1P28360 RNY3P5-201ENST00000384127 102 ntBASIC4.18□□□□□ -1.74
MSX1P28360 RNA5SP201-201ENST00000410316 124 ntBASIC4.18□□□□□ -1.74
MSX1P28360 Z75741.1-201ENST00000446793 314 ntBASIC4.18□□□□□ -1.74
MSX1P28360 APOA2-205ENST00000468465 421 ntTSL 2 BASIC4.18□□□□□ -1.74
MSX1P28360 RN7SL817P-201ENST00000480777 288 ntBASIC4.18□□□□□ -1.74
MSX1P28360 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC4.18□□□□□ -1.74
MSX1P28360 RNU1-117P-201ENST00000517041 158 ntBASIC4.18□□□□□ -1.74
MSX1P28360 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC4.18□□□□□ -1.74
MSX1P28360 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC4.18□□□□□ -1.74
MSX1P28360 EIF4A1P12-201ENST00000551910 141 ntBASIC4.18□□□□□ -1.74
MSX1P28360 Y_RNA.757-201ENST00000578934 114 ntBASIC4.18□□□□□ -1.74
MSX1P28360 AC091178.1-203ENST00000584586 279 ntBASIC4.18□□□□□ -1.74
MSX1P28360 SNX18P1Y-201ENST00000616231 511 ntBASIC4.18□□□□□ -1.74
MSX1P28360 CENPCP1-201ENST00000533085 2578 ntBASIC4.18□□□□□ -1.74
MSX1P28360 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
MSX1P28360 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
MSX1P28360 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.74
MSX1P28360 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
MSX1P28360 RNU1-75P-201ENST00000347264 129 ntBASIC4.17□□□□□ -1.74
MSX1P28360 RNU6-235P-201ENST00000362644 107 ntBASIC4.17□□□□□ -1.74
MSX1P28360 Z74021.1-201ENST00000423610 407 ntBASIC4.17□□□□□ -1.74
MSX1P28360 AL365496.1-201ENST00000426885 215 ntBASIC4.17□□□□□ -1.74
MSX1P28360 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.17□□□□□ -1.74
MSX1P28360 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC4.17□□□□□ -1.74
MSX1P28360 AL714022.1-201ENST00000439897 151 ntBASIC4.17□□□□□ -1.74
MSX1P28360 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.17□□□□□ -1.74
MSX1P28360 NDUFS5P3-201ENST00000450668 321 ntBASIC4.17□□□□□ -1.74
MSX1P28360 AC109327.1-201ENST00000471666 403 ntBASIC4.17□□□□□ -1.74
MSX1P28360 AC078918.1-201ENST00000498515 228 ntBASIC4.17□□□□□ -1.74
MSX1P28360 AC026402.1-201ENST00000513642 170 ntBASIC4.17□□□□□ -1.74
MSX1P28360 SNORA70.12-201ENST00000516084 153 ntBASIC4.17□□□□□ -1.74
MSX1P28360 RNU6-928P-201ENST00000516876 104 ntBASIC4.17□□□□□ -1.74
MSX1P28360 AC025281.1-201ENST00000567026 265 ntBASIC4.17□□□□□ -1.74
MSX1P28360 MIR5006-201ENST00000583027 110 ntBASIC4.17□□□□□ -1.74
MSX1P28360 AC024220.1-201ENST00000603675 484 ntBASIC4.17□□□□□ -1.74
MSX1P28360 U6.95-201ENST00000636931 70 ntBASIC4.17□□□□□ -1.74
MSX1P28360 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
MSX1P28360 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
MSX1P28360 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.74
MSX1P28360 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.17□□□□□ -1.74
MSX1P28360 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
MSX1P28360 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
MSX1P28360 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
MSX1P28360 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
MSX1P28360 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
MSX1P28360 AC068254.2-201ENST00000623938 3577 ntBASIC4.16□□□□□ -1.74
MSX1P28360 AC021146.4-201ENST00000309229 279 ntBASIC4.16□□□□□ -1.74
MSX1P28360 RNA5SP509-201ENST00000364577 119 ntBASIC4.16□□□□□ -1.74
MSX1P28360 Y_RNA.294-201ENST00000364916 102 ntBASIC4.16□□□□□ -1.74
MSX1P28360 RNU6-597P-201ENST00000365620 102 ntBASIC4.16□□□□□ -1.74
MSX1P28360 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
MSX1P28360 AL591034.1-201ENST00000407447 340 ntBASIC4.16□□□□□ -1.74
MSX1P28360 RNA5SP146-201ENST00000410743 123 ntBASIC4.16□□□□□ -1.74
MSX1P28360 AC010618.1-201ENST00000469924 477 ntBASIC4.16□□□□□ -1.74
MSX1P28360 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
MSX1P28360 RN7SL41P-201ENST00000476144 297 ntBASIC4.16□□□□□ -1.74
MSX1P28360 AC015795.1-201ENST00000513669 327 ntBASIC4.16□□□□□ -1.74
MSX1P28360 AC090142.3-201ENST00000519012 385 ntBASIC4.16□□□□□ -1.74
MSX1P28360 MIR3160-1-201ENST00000577972 85 ntBASIC4.16□□□□□ -1.74
MSX1P28360 AC025754.2-201ENST00000606491 432 ntBASIC4.16□□□□□ -1.74
MSX1P28360 AP005019.3-201ENST00000620418 560 ntBASIC4.16□□□□□ -1.74
MSX1P28360 AC011944.2-201ENST00000624440 683 ntBASIC4.16□□□□□ -1.74
MSX1P28360 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.16□□□□□ -1.74
MSX1P28360 MIR3199-2-201ENST00000636243 86 ntBASIC4.16□□□□□ -1.74
MSX1P28360 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.16□□□□□ -1.74
MSX1P28360 AL133412.1-201ENST00000380194 2992 ntBASIC4.16□□□□□ -1.74
MSX1P28360 AL136964.1-201ENST00000622038 2990 ntBASIC4.16□□□□□ -1.74
MSX1P28360 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
MSX1P28360 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.16□□□□□ -1.74
MSX1P28360 AC004944.1-201ENST00000517807 3059 ntBASIC4.15□□□□□ -1.74
MSX1P28360 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.15□□□□□ -1.74
MSX1P28360 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.74
MSX1P28360 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
MSX1P28360 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.15□□□□□ -1.75
MSX1P28360 SNORA1.3-201ENST00000384676 136 ntBASIC4.15□□□□□ -1.75
MSX1P28360 Y_RNA.584-201ENST00000391090 114 ntBASIC4.15□□□□□ -1.75
MSX1P28360 RNU6-383P-201ENST00000410864 94 ntBASIC4.15□□□□□ -1.75
MSX1P28360 AC005300.1-201ENST00000428401 373 ntBASIC4.15□□□□□ -1.75
MSX1P28360 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC4.15□□□□□ -1.75
MSX1P28360 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.15□□□□□ -1.75
MSX1P28360 AL161651.1-201ENST00000440882 223 ntBASIC4.15□□□□□ -1.75
MSX1P28360 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC4.15□□□□□ -1.75
MSX1P28360 RNU6-772P-201ENST00000516042 105 ntBASIC4.15□□□□□ -1.75
MSX1P28360 AC011602.1-201ENST00000546484 331 ntBASIC4.15□□□□□ -1.75
MSX1P28360 MIR3121-201ENST00000579680 77 ntBASIC4.15□□□□□ -1.75
MSX1P28360 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC4.15□□□□□ -1.75
MSX1P28360 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC4.15□□□□□ -1.75
MSX1P28360 AC099778.2-201ENST00000610904 211 ntBASIC4.15□□□□□ -1.75
MSX1P28360 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
MSX1P28360 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
MSX1P28360 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.15□□□□□ -1.75
MSX1P28360 AC010733.2-201ENST00000589496 5702 ntBASIC4.15□□□□□ -1.75
MSX1P28360 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.15□□□□□ -1.75
MSX1P28360 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 164.7 ms