Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RNU6-6P-201ENST00000606623 107 ntBASIC2.01□□□□□ -2.09
SDC3O75056 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.01□□□□□ -2.09
SDC3O75056 uc_338.34-201ENST00000617467 174 ntBASIC2.01□□□□□ -2.09
SDC3O75056 AC139792.3-201ENST00000623525 224 ntBASIC2.01□□□□□ -2.09
SDC3O75056 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.01□□□□□ -2.09
SDC3O75056 AP000553.5-201ENST00000641933 54 ntBASIC2.01□□□□□ -2.09
SDC3O75056 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
SDC3O75056 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SDC3O75056 Y_RNA.40-201ENST00000362645 93 ntBASIC2□□□□□ -2.09
SDC3O75056 RNU6-655P-201ENST00000362858 107 ntBASIC2□□□□□ -2.09
SDC3O75056 RNU6-1210P-201ENST00000363775 107 ntBASIC2□□□□□ -2.09
SDC3O75056 RNU6-266P-201ENST00000364225 107 ntBASIC2□□□□□ -2.09
SDC3O75056 RNU6-1322P-201ENST00000364309 107 ntBASIC2□□□□□ -2.09
SDC3O75056 Y_RNA.559-201ENST00000384686 107 ntBASIC2□□□□□ -2.09
SDC3O75056 MIR583-201ENST00000384846 75 ntBASIC2□□□□□ -2.09
SDC3O75056 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SDC3O75056 CBX3P9-201ENST00000402326 552 ntBASIC2□□□□□ -2.09
SDC3O75056 CYCSP49-201ENST00000420810 319 ntBASIC2□□□□□ -2.09
SDC3O75056 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SDC3O75056 RNU6-261P-201ENST00000459506 102 ntBASIC2□□□□□ -2.09
SDC3O75056 AL121594.1-201ENST00000475906 575 ntBASIC2□□□□□ -2.09
SDC3O75056 RPS27P21-201ENST00000486977 252 ntBASIC2□□□□□ -2.09
SDC3O75056 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2□□□□□ -2.09
SDC3O75056 AC107401.1-201ENST00000503426 685 ntBASIC2□□□□□ -2.09
SDC3O75056 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2□□□□□ -2.09
SDC3O75056 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2□□□□□ -2.09
SDC3O75056 RNU2-19P-201ENST00000517288 84 ntBASIC2□□□□□ -2.09
SDC3O75056 MTND4P7-201ENST00000523876 130 ntBASIC2□□□□□ -2.09
SDC3O75056 AP001893.2-201ENST00000526949 202 ntBASIC2□□□□□ -2.09
SDC3O75056 AC022880.1-201ENST00000534017 973 ntBASIC2□□□□□ -2.09
SDC3O75056 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2□□□□□ -2.09
SDC3O75056 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2□□□□□ -2.09
SDC3O75056 IMMP1LP2-201ENST00000552954 492 ntBASIC2□□□□□ -2.09
SDC3O75056 AC090115.3-201ENST00000553218 849 ntBASIC2□□□□□ -2.09
SDC3O75056 MIR5583-1-201ENST00000580941 59 ntBASIC2□□□□□ -2.09
SDC3O75056 AC078899.2-201ENST00000595282 212 ntBASIC2□□□□□ -2.09
SDC3O75056 VN1R107P-201ENST00000601784 209 ntBASIC2□□□□□ -2.09
SDC3O75056 ELOCP5-201ENST00000604924 333 ntBASIC2□□□□□ -2.09
SDC3O75056 AC123912.5-201ENST00000605470 343 ntBASIC2□□□□□ -2.09
SDC3O75056 AC002044.1-201ENST00000606707 158 ntBASIC2□□□□□ -2.09
SDC3O75056 AC124864.2-201ENST00000624736 186 ntBASIC2□□□□□ -2.09
SDC3O75056 OR5AK4P-201ENST00000635912 903 ntBASIC2□□□□□ -2.09
SDC3O75056 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SDC3O75056 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
SDC3O75056 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2□□□□□ -2.09
SDC3O75056 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
SDC3O75056 RNU6-212P-201ENST00000362642 104 ntBASIC1.99□□□□□ -2.09
SDC3O75056 RNA5SP213-201ENST00000391031 106 ntBASIC1.99□□□□□ -2.09
SDC3O75056 MTCO3P40-201ENST00000392516 676 ntBASIC1.99□□□□□ -2.09
SDC3O75056 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.99□□□□□ -2.09
SDC3O75056 AC027124.2-201ENST00000428249 105 ntBASIC1.99□□□□□ -2.09
SDC3O75056 SRIP2-201ENST00000428470 166 ntBASIC1.99□□□□□ -2.09
SDC3O75056 TIMM9P3-201ENST00000428659 274 ntBASIC1.99□□□□□ -2.09
SDC3O75056 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.99□□□□□ -2.09
SDC3O75056 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.99□□□□□ -2.09
SDC3O75056 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.99□□□□□ -2.09
SDC3O75056 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.99□□□□□ -2.09
SDC3O75056 RNU6-377P-201ENST00000515965 102 ntBASIC1.99□□□□□ -2.09
SDC3O75056 MIR514B-201ENST00000516774 80 ntBASIC1.99□□□□□ -2.09
SDC3O75056 RNA5SP137-201ENST00000516833 135 ntBASIC1.99□□□□□ -2.09
SDC3O75056 AC069113.1-201ENST00000517763 267 ntBASIC1.99□□□□□ -2.09
SDC3O75056 AC034114.1-201ENST00000520293 285 ntBASIC1.99□□□□□ -2.09
SDC3O75056 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.99□□□□□ -2.09
SDC3O75056 AK6P1-201ENST00000540219 478 ntBASIC1.99□□□□□ -2.09
SDC3O75056 AC002984.1-201ENST00000591692 448 ntBASIC1.99□□□□□ -2.09
SDC3O75056 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.99□□□□□ -2.09
SDC3O75056 SNRPGP19-201ENST00000603826 189 ntBASIC1.99□□□□□ -2.09
SDC3O75056 APOOP1-201ENST00000604695 592 ntBASIC1.99□□□□□ -2.09
SDC3O75056 Z82243.1-201ENST00000609432 473 ntBASIC1.99□□□□□ -2.09
SDC3O75056 U2.17-201ENST00000611454 95 ntBASIC1.99□□□□□ -2.09
SDC3O75056 HULC.1-201ENST00000612720 240 ntBASIC1.99□□□□□ -2.09
SDC3O75056 AL158209.2-201ENST00000619266 216 ntBASIC1.99□□□□□ -2.09
SDC3O75056 AC098657.3-201ENST00000620434 263 ntBASIC1.99□□□□□ -2.09
SDC3O75056 MIR6863-201ENST00000636112 90 ntBASIC1.99□□□□□ -2.09
SDC3O75056 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC1.99□□□□□ -2.09
SDC3O75056 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
SDC3O75056 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
SDC3O75056 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.98□□□□□ -2.09
SDC3O75056 AL359851.1-201ENST00000569460 4997 ntBASIC1.98□□□□□ -2.09
SDC3O75056 RNU6-527P-201ENST00000363425 104 ntBASIC1.98□□□□□ -2.09
SDC3O75056 Y_RNA.381-201ENST00000365666 102 ntBASIC1.98□□□□□ -2.09
SDC3O75056 SNORA40.18-201ENST00000391200 128 ntBASIC1.98□□□□□ -2.09
SDC3O75056 AC019129.1-201ENST00000403786 261 ntBASIC1.98□□□□□ -2.09
SDC3O75056 AL606923.1-201ENST00000406616 190 ntBASIC1.98□□□□□ -2.09
SDC3O75056 AL117339.3-201ENST00000418733 162 ntBASIC1.98□□□□□ -2.09
SDC3O75056 AL445685.2-201ENST00000422551 342 ntBASIC1.98□□□□□ -2.09
SDC3O75056 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC1.98□□□□□ -2.09
SDC3O75056 VN1R108P-201ENST00000431580 830 ntBASIC1.98□□□□□ -2.09
SDC3O75056 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.98□□□□□ -2.09
SDC3O75056 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.98□□□□□ -2.09
SDC3O75056 GPM6BP3-201ENST00000442797 145 ntBASIC1.98□□□□□ -2.09
SDC3O75056 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.98□□□□□ -2.09
SDC3O75056 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.98□□□□□ -2.09
SDC3O75056 RPL23AP63-201ENST00000498752 471 ntBASIC1.98□□□□□ -2.09
SDC3O75056 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC1.98□□□□□ -2.09
SDC3O75056 CCDC34P1-201ENST00000507441 517 ntBASIC1.98□□□□□ -2.09
SDC3O75056 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.98□□□□□ -2.09
SDC3O75056 CYCSP27-201ENST00000527643 293 ntBASIC1.98□□□□□ -2.09
SDC3O75056 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.98□□□□□ -2.09
SDC3O75056 AC233702.2-202ENST00000562547 291 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 163.4 ms