Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 RNU11-5P-201ENST00000391216 129 ntBASIC0.77□□□□□ -2.29
VPS29Q9UBQ0 RNU6ATAC15P-201ENST00000408279 121 ntBASIC0.77□□□□□ -2.29
VPS29Q9UBQ0 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC0.77□□□□□ -2.29
VPS29Q9UBQ0 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC0.77□□□□□ -2.29
VPS29Q9UBQ0 IGHVII-53-1-201ENST00000519538 255 ntBASIC0.77□□□□□ -2.29
VPS29Q9UBQ0 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.77□□□□□ -2.29
VPS29Q9UBQ0 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.77□□□□□ -2.29
VPS29Q9UBQ0 AP005136.1-201ENST00000579765 429 ntBASIC0.77□□□□□ -2.29
VPS29Q9UBQ0 BCRP9-201ENST00000605312 388 ntBASIC0.77□□□□□ -2.29
VPS29Q9UBQ0 AL022345.2-201ENST00000606307 135 ntBASIC0.77□□□□□ -2.29
VPS29Q9UBQ0 AL020996.3-201ENST00000606617 222 ntBASIC0.77□□□□□ -2.29
VPS29Q9UBQ0 U6.42-201ENST00000618440 107 ntBASIC0.77□□□□□ -2.29
VPS29Q9UBQ0 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC0.77□□□□□ -2.29
VPS29Q9UBQ0 RNU6-413P-201ENST00000384115 107 ntBASIC0.76□□□□□ -2.29
VPS29Q9UBQ0 RNU6-331P-201ENST00000384724 107 ntBASIC0.76□□□□□ -2.29
VPS29Q9UBQ0 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
VPS29Q9UBQ0 RNU4-22P-201ENST00000411058 166 ntBASIC0.76□□□□□ -2.29
VPS29Q9UBQ0 POLR2J4-204ENST00000418424 324 ntBASIC0.76□□□□□ -2.29
VPS29Q9UBQ0 AC099677.2-201ENST00000436385 175 ntBASIC0.76□□□□□ -2.29
VPS29Q9UBQ0 AL008629.1-201ENST00000438615 184 ntBASIC0.76□□□□□ -2.29
VPS29Q9UBQ0 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.76□□□□□ -2.29
VPS29Q9UBQ0 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.76□□□□□ -2.29
VPS29Q9UBQ0 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC0.76□□□□□ -2.29
VPS29Q9UBQ0 AC103851.1-201ENST00000506833 274 ntBASIC0.76□□□□□ -2.29
VPS29Q9UBQ0 AC079140.3-201ENST00000511111 550 ntBASIC0.76□□□□□ -2.29
VPS29Q9UBQ0 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
VPS29Q9UBQ0 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC0.76□□□□□ -2.29
VPS29Q9UBQ0 MIR3146-201ENST00000580367 79 ntBASIC0.76□□□□□ -2.29
VPS29Q9UBQ0 MIR4661-201ENST00000582720 75 ntBASIC0.76□□□□□ -2.29
VPS29Q9UBQ0 AC091965.4-201ENST00000607691 587 ntBASIC0.76□□□□□ -2.29
VPS29Q9UBQ0 AL021879.1-201ENST00000611756 288 ntBASIC0.76□□□□□ -2.29
VPS29Q9UBQ0 SNORA63.3-201ENST00000362682 132 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 Y_RNA.192-201ENST00000363977 102 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 SNORA18.2-201ENST00000383865 132 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 CYCSP33-201ENST00000414485 327 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 MTCO3P41-201ENST00000414801 328 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 RPL23AP30-201ENST00000432419 501 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 SNRPEP8-201ENST00000442866 260 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 AC007327.1-201ENST00000447461 264 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 ART2BP-201ENST00000453501 499 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 HMGN2P9-201ENST00000476875 229 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 RN7SKP265-201ENST00000516448 223 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 RNA5SP503-201ENST00000517047 117 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 MIR544B-201ENST00000582372 78 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 MIR548AC-201ENST00000585049 88 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 AC018889.1-201ENST00000605372 397 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 RNU6-88P-201ENST00000606801 100 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 RNU6-87P-201ENST00000607561 108 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 AC072039.2-201ENST00000608883 439 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 OR4G3P-201ENST00000633500 913 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 MIR6866-201ENST00000638146 69 ntBASIC0.75□□□□□ -2.29
VPS29Q9UBQ0 SNORA63D-201ENST00000364359 132 ntBASIC0.74□□□□□ -2.29
VPS29Q9UBQ0 RNU6-1019P-201ENST00000364424 107 ntBASIC0.74□□□□□ -2.29
VPS29Q9UBQ0 Y_RNA.338-201ENST00000365320 114 ntBASIC0.74□□□□□ -2.29
VPS29Q9UBQ0 MIR194-1-201ENST00000384892 85 ntBASIC0.74□□□□□ -2.29
VPS29Q9UBQ0 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.74□□□□□ -2.29
VPS29Q9UBQ0 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.74□□□□□ -2.29
VPS29Q9UBQ0 AC013410.2-201ENST00000422627 201 ntBASIC0.74□□□□□ -2.29
VPS29Q9UBQ0 MTND4P20-201ENST00000424125 869 ntBASIC0.74□□□□□ -2.29
VPS29Q9UBQ0 AC007969.2-201ENST00000441891 191 ntBASIC0.74□□□□□ -2.29
VPS29Q9UBQ0 RPL31P3-201ENST00000458430 332 ntBASIC0.74□□□□□ -2.29
VPS29Q9UBQ0 AC145146.1-201ENST00000496370 254 ntBASIC0.74□□□□□ -2.29
VPS29Q9UBQ0 AC112198.4-201ENST00000515450 351 ntBASIC0.74□□□□□ -2.29
VPS29Q9UBQ0 SCARNA16.2-201ENST00000516520 172 ntBASIC0.74□□□□□ -2.29
VPS29Q9UBQ0 CYCSP23-201ENST00000519781 313 ntBASIC0.74□□□□□ -2.29
VPS29Q9UBQ0 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC0.74□□□□□ -2.29
VPS29Q9UBQ0 UBE2Q2P8-201ENST00000560644 102 ntBASIC0.74□□□□□ -2.29
VPS29Q9UBQ0 AC083806.3-201ENST00000614016 455 ntBASIC0.74□□□□□ -2.29
VPS29Q9UBQ0 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.74□□□□□ -2.29
VPS29Q9UBQ0 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 MIR373-201ENST00000362273 69 ntBASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 RNU4-15P-201ENST00000362613 141 ntBASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 RNY1P10-201ENST00000363268 113 ntBASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 RNU6-960P-201ENST00000364056 120 ntBASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 RNU6-384P-201ENST00000364900 104 ntBASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 HMGN1P14-201ENST00000412459 517 ntBASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 snoU13.27-201ENST00000459278 104 ntBASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 MTCO3P9-201ENST00000506989 781 ntBASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 RNU6-1053P-201ENST00000515930 101 ntBASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 AC115990.1-201ENST00000526957 301 ntBASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 MIR3664-201ENST00000579074 99 ntBASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 DEFB131E-202ENST00000602581 683 ntBASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 AL034555.1-201ENST00000604816 211 ntBASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 AC016727.1-205ENST00000605437 569 ntBASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 MIR3976-201ENST00000606807 139 ntBASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 AC040896.1-201ENST00000613819 479 ntBASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 AL359547.2-201ENST00000615810 418 ntBASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 AC126544.2-201ENST00000625174 749 ntBASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
VPS29Q9UBQ0 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms