Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 UQCRHP3-201ENST00000451503 251 ntBASIC3.28□□□□□ -1.88
DDX56Q9NY93 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.28□□□□□ -1.88
DDX56Q9NY93 AC008155.2-201ENST00000464337 397 ntBASIC3.28□□□□□ -1.88
DDX56Q9NY93 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC3.28□□□□□ -1.88
DDX56Q9NY93 RNA5SP385-201ENST00000515947 110 ntBASIC3.28□□□□□ -1.88
DDX56Q9NY93 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.28□□□□□ -1.88
DDX56Q9NY93 AC109446.1-201ENST00000566172 220 ntBASIC3.28□□□□□ -1.88
DDX56Q9NY93 CYP4A27P-201ENST00000567218 190 ntBASIC3.28□□□□□ -1.88
DDX56Q9NY93 SNORA43.4-201ENST00000629559 138 ntBASIC3.28□□□□□ -1.88
DDX56Q9NY93 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC3.28□□□□□ -1.88
DDX56Q9NY93 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.28□□□□□ -1.88
DDX56Q9NY93 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.28□□□□□ -1.88
DDX56Q9NY93 MTND5P9-201ENST00000503854 1755 ntBASIC3.28□□□□□ -1.89
DDX56Q9NY93 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.27□□□□□ -1.89
DDX56Q9NY93 AL353743.1-202ENST00000431724 1695 ntBASIC3.27□□□□□ -1.89
DDX56Q9NY93 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
DDX56Q9NY93 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
DDX56Q9NY93 RNU6-1159P-201ENST00000362933 107 ntBASIC3.27□□□□□ -1.89
DDX56Q9NY93 Y_RNA.509-201ENST00000384506 99 ntBASIC3.27□□□□□ -1.89
DDX56Q9NY93 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
DDX56Q9NY93 RNU6-1304P-201ENST00000411374 106 ntBASIC3.27□□□□□ -1.89
DDX56Q9NY93 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.27□□□□□ -1.89
DDX56Q9NY93 AC012306.1-201ENST00000423267 114 ntBASIC3.27□□□□□ -1.89
DDX56Q9NY93 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC3.27□□□□□ -1.89
DDX56Q9NY93 USP9YP30-201ENST00000430729 455 ntBASIC3.27□□□□□ -1.89
DDX56Q9NY93 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.27□□□□□ -1.89
DDX56Q9NY93 FTH1P25-201ENST00000447665 469 ntBASIC3.27□□□□□ -1.89
DDX56Q9NY93 AL353705.4-201ENST00000449661 238 ntBASIC3.27□□□□□ -1.89
DDX56Q9NY93 AL353752.1-201ENST00000454946 260 ntBASIC3.27□□□□□ -1.89
DDX56Q9NY93 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.27□□□□□ -1.89
DDX56Q9NY93 RNU6-307P-201ENST00000516743 106 ntBASIC3.27□□□□□ -1.89
DDX56Q9NY93 SNORA31.16-201ENST00000516773 139 ntBASIC3.27□□□□□ -1.89
DDX56Q9NY93 SNORA48.11-201ENST00000517015 89 ntBASIC3.27□□□□□ -1.89
DDX56Q9NY93 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.27□□□□□ -1.89
DDX56Q9NY93 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.27□□□□□ -1.89
DDX56Q9NY93 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
DDX56Q9NY93 Z98751.3-201ENST00000604447 521 ntBASIC3.27□□□□□ -1.89
DDX56Q9NY93 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.27□□□□□ -1.89
DDX56Q9NY93 AL359314.1-201ENST00000616913 261 ntBASIC3.27□□□□□ -1.89
DDX56Q9NY93 U4atac.1-201ENST00000618345 95 ntBASIC3.27□□□□□ -1.89
DDX56Q9NY93 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.27□□□□□ -1.89
DDX56Q9NY93 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.27□□□□□ -1.89
DDX56Q9NY93 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
DDX56Q9NY93 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
DDX56Q9NY93 RNU4-79P-201ENST00000362764 141 ntBASIC3.26□□□□□ -1.89
DDX56Q9NY93 RNA5SP125-201ENST00000364843 120 ntBASIC3.26□□□□□ -1.89
DDX56Q9NY93 Y_RNA.387-201ENST00000383918 102 ntBASIC3.26□□□□□ -1.89
DDX56Q9NY93 Y_RNA.473-201ENST00000384333 102 ntBASIC3.26□□□□□ -1.89
DDX56Q9NY93 MIR561-201ENST00000385216 97 ntBASIC3.26□□□□□ -1.89
DDX56Q9NY93 RNU6-1050P-201ENST00000410388 107 ntBASIC3.26□□□□□ -1.89
DDX56Q9NY93 AC236972.1-201ENST00000433225 199 ntBASIC3.26□□□□□ -1.89
DDX56Q9NY93 RNU7-26P-201ENST00000458980 63 ntBASIC3.26□□□□□ -1.89
DDX56Q9NY93 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.26□□□□□ -1.89
DDX56Q9NY93 AC026782.1-201ENST00000512952 449 ntBASIC3.26□□□□□ -1.89
DDX56Q9NY93 RNU6-559P-201ENST00000516151 98 ntBASIC3.26□□□□□ -1.89
DDX56Q9NY93 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.26□□□□□ -1.89
DDX56Q9NY93 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.26□□□□□ -1.89
DDX56Q9NY93 FRG2DP-202ENST00000566967 323 ntBASIC3.26□□□□□ -1.89
DDX56Q9NY93 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.26□□□□□ -1.89
DDX56Q9NY93 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.26□□□□□ -1.89
DDX56Q9NY93 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC3.26□□□□□ -1.89
DDX56Q9NY93 AC069234.5-201ENST00000611056 416 ntBASIC3.26□□□□□ -1.89
DDX56Q9NY93 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.26□□□□□ -1.89
DDX56Q9NY93 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
DDX56Q9NY93 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
DDX56Q9NY93 SNORA29-201ENST00000384183 140 ntBASIC3.25□□□□□ -1.89
DDX56Q9NY93 MIR449B-201ENST00000384995 97 ntBASIC3.25□□□□□ -1.89
DDX56Q9NY93 AL357075.1-201ENST00000404107 726 ntBASIC3.25□□□□□ -1.89
DDX56Q9NY93 RNU6-174P-201ENST00000410406 106 ntBASIC3.25□□□□□ -1.89
DDX56Q9NY93 RNA5SP494-201ENST00000410653 129 ntBASIC3.25□□□□□ -1.89
DDX56Q9NY93 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.25□□□□□ -1.89
DDX56Q9NY93 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
DDX56Q9NY93 Y_RNA.632-201ENST00000459189 102 ntBASIC3.25□□□□□ -1.89
DDX56Q9NY93 AC109925.1-201ENST00000478069 331 ntBASIC3.25□□□□□ -1.89
DDX56Q9NY93 RPS29P2-201ENST00000479278 136 ntBASIC3.25□□□□□ -1.89
DDX56Q9NY93 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.25□□□□□ -1.89
DDX56Q9NY93 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.25□□□□□ -1.89
DDX56Q9NY93 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC3.25□□□□□ -1.89
DDX56Q9NY93 MIR3158-1-201ENST00000583596 81 ntBASIC3.25□□□□□ -1.89
DDX56Q9NY93 MIR5690-201ENST00000583739 73 ntBASIC3.25□□□□□ -1.89
DDX56Q9NY93 AC005899.2-201ENST00000584353 90 ntBASIC3.25□□□□□ -1.89
DDX56Q9NY93 MIR4506-201ENST00000584693 77 ntBASIC3.25□□□□□ -1.89
DDX56Q9NY93 RPL23AP88-201ENST00000605759 454 ntBASIC3.25□□□□□ -1.89
DDX56Q9NY93 AC009318.2-201ENST00000610917 651 ntBASIC3.25□□□□□ -1.89
DDX56Q9NY93 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.25□□□□□ -1.89
DDX56Q9NY93 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
DDX56Q9NY93 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
DDX56Q9NY93 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
DDX56Q9NY93 AC073346.2-201ENST00000624724 2058 ntBASIC3.24□□□□□ -1.89
DDX56Q9NY93 MTCO1P12-201ENST00000414273 1543 ntBASIC3.24□□□□□ -1.89
DDX56Q9NY93 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.24□□□□□ -1.89
DDX56Q9NY93 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
DDX56Q9NY93 RNU6-1032P-201ENST00000384100 107 ntBASIC3.24□□□□□ -1.89
DDX56Q9NY93 SNORD15B-201ENST00000384714 146 ntBASIC3.24□□□□□ -1.89
DDX56Q9NY93 RNA5SP274-201ENST00000410484 108 ntBASIC3.24□□□□□ -1.89
DDX56Q9NY93 RNU4-47P-201ENST00000410876 114 ntBASIC3.24□□□□□ -1.89
DDX56Q9NY93 RNU6-370P-201ENST00000411008 104 ntBASIC3.24□□□□□ -1.89
DDX56Q9NY93 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.24□□□□□ -1.89
DDX56Q9NY93 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.24□□□□□ -1.89
DDX56Q9NY93 RN7SL283P-201ENST00000489055 303 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 180.3 ms