Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
MKS1Q9NXB0 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
MKS1Q9NXB0 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
MKS1Q9NXB0 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.27□□□□□ -1.89
MKS1Q9NXB0 Y_RNA.202-201ENST00000364083 110 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 SNORA68.1-201ENST00000364537 132 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.27□□□□□ -1.89
MKS1Q9NXB0 AL035423.1-201ENST00000420331 213 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 AL139281.1-201ENST00000422120 335 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 AIMP1P2-201ENST00000425294 312 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
MKS1Q9NXB0 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.27□□□□□ -1.89
MKS1Q9NXB0 Z82188.1-201ENST00000436709 154 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 RPL21P2-201ENST00000440049 481 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 Z96811.1-201ENST00000445880 108 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC3.27□□□□□ -1.89
MKS1Q9NXB0 RPL27AP5-201ENST00000469428 449 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 AC090525.1-201ENST00000479116 478 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 AC096576.1-201ENST00000489014 359 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.27□□□□□ -1.89
MKS1Q9NXB0 AC105758.1-201ENST00000506038 399 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 RN7SKP18-201ENST00000516005 275 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 SNORA31.16-201ENST00000516773 139 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.27□□□□□ -1.89
MKS1Q9NXB0 AC104581.2-201ENST00000572227 430 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 AC010928.2-201ENST00000588017 287 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.27□□□□□ -1.89
MKS1Q9NXB0 MIR7515-201ENST00000637837 67 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
MKS1Q9NXB0 AL353743.1-202ENST00000431724 1695 ntBASIC3.27□□□□□ -1.89
MKS1Q9NXB0 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
MKS1Q9NXB0 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
MKS1Q9NXB0 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
MKS1Q9NXB0 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
MKS1Q9NXB0 RNU1-115P-201ENST00000365329 160 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 SNORA22B-201ENST00000383876 138 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 SNORD21-201ENST00000383953 95 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 Y_RNA.405-201ENST00000383979 100 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 Y_RNA.451-201ENST00000384200 100 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 Y_RNA.524-201ENST00000384564 100 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 Y_RNA.561-201ENST00000384694 100 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 SNORA46-201ENST00000384762 135 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 SNORD17-201ENST00000390930 237 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 SNORA12.2-201ENST00000391040 156 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 RN7SKP220-201ENST00000410611 288 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.26□□□□□ -1.89
MKS1Q9NXB0 AC007098.1-201ENST00000420122 367 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 AC092017.2-201ENST00000427600 362 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.26□□□□□ -1.89
MKS1Q9NXB0 MTCO3P29-201ENST00000432119 779 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.26□□□□□ -1.89
MKS1Q9NXB0 snoU13.30-201ENST00000458951 104 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 AC087477.1-201ENST00000465747 340 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
MKS1Q9NXB0 RNU7-175P-201ENST00000515915 61 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 AC007536.1-201ENST00000533382 349 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 HSPE1P20-201ENST00000538133 289 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.26□□□□□ -1.89
MKS1Q9NXB0 MIR3136-201ENST00000583498 78 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 AC022432.1-201ENST00000595739 310 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 AC010620.2-201ENST00000600135 313 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 AL078605.1-201ENST00000603529 500 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.26□□□□□ -1.89
MKS1Q9NXB0 SNORD98-201ENST00000636377 67 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
MKS1Q9NXB0 AC093831.2-201ENST00000624393 3427 ntBASIC3.26□□□□□ -1.89
MKS1Q9NXB0 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
MKS1Q9NXB0 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
MKS1Q9NXB0 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
MKS1Q9NXB0 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
MKS1Q9NXB0 OR56A5-201ENST00000340110 738 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 RNU6-655P-201ENST00000362858 107 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 RNU6-486P-201ENST00000363116 107 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 RNY1P14-201ENST00000384426 108 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 RNU6-1328P-201ENST00000410938 106 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 MCFD2P1-201ENST00000417812 300 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.25□□□□□ -1.89
MKS1Q9NXB0 EIF4EP4-201ENST00000424916 578 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.25□□□□□ -1.89
MKS1Q9NXB0 MTND4P19-201ENST00000446659 478 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 UQCRHP3-201ENST00000451503 251 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 RN7SL75P-201ENST00000461926 281 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 HMGB1P35-201ENST00000503360 598 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 AC021146.2-201ENST00000504736 556 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 SCARNA15.1-201ENST00000516384 125 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 IGKV2-26-201ENST00000518305 343 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 RNU6-988P-201ENST00000519081 107 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.25□□□□□ -1.89
MKS1Q9NXB0 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.25□□□□□ -1.89
MKS1Q9NXB0 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.25□□□□□ -1.89
MKS1Q9NXB0 AC006157.1-201ENST00000611750 366 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 MIR1244-1-201ENST00000612829 85 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 AC007485.1-201ENST00000616755 206 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 MIR1244-3-201ENST00000635744 85 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 MIR1244-2-201ENST00000636449 85 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 MIR1244-4-202ENST00000636813 85 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 AC010329.5-201ENST00000623497 2174 ntBASIC3.25□□□□□ -1.89
MKS1Q9NXB0 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 158.2 ms