Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 SNORD27-201ENST00000363981 72 ntBASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 RNU6-1280P-201ENST00000365211 107 ntBASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 SNORA29-201ENST00000384183 140 ntBASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 AC017079.2-201ENST00000416102 485 ntBASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 RPS15AP7-201ENST00000439294 405 ntBASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 RPL26P9-201ENST00000457466 433 ntBASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 MRPL42P6-201ENST00000486397 371 ntBASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 RPS27AP10-201ENST00000496103 208 ntBASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 RNU4-71P-201ENST00000516258 113 ntBASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 DEFB108E-201ENST00000524692 240 ntBASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 MIR5680-201ENST00000577577 84 ntBASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 MIR3529-201ENST00000637713 78 ntBASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
CCDC87Q9NVE4 RNU6-222P-201ENST00000362438 107 ntBASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 RNU5B-2P-201ENST00000363036 113 ntBASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 RNU6-1141P-201ENST00000364520 107 ntBASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 RNU6-541P-201ENST00000384709 110 ntBASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 FTH1P15-201ENST00000406984 280 ntBASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 RNA5SP306-201ENST00000411087 107 ntBASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 RN7SKP53-201ENST00000411337 315 ntBASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 HMGN2P10-201ENST00000448085 265 ntBASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 AF186996.7-201ENST00000492781 209 ntBASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 RN7SL504P-201ENST00000494496 287 ntBASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 AC016632.1-201ENST00000503994 196 ntBASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 RNU6-138P-201ENST00000515952 107 ntBASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 RN7SKP40-201ENST00000517211 242 ntBASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 CKS1BP7-201ENST00000522230 235 ntBASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 HIGD1AP1-201ENST00000550979 275 ntBASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 AL138963.2-201ENST00000605137 226 ntBASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 AC006386.2-201ENST00000624491 75 ntBASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 AC012005.1-201ENST00000624575 75 ntBASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC87Q9NVE4 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 RNU6-858P-201ENST00000362436 107 ntBASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 RNY1-201ENST00000364228 113 ntBASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 RNU6-879P-201ENST00000364328 108 ntBASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 RNU6-338P-201ENST00000383888 105 ntBASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 Y_RNA.462-201ENST00000384268 102 ntBASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 RN7SKP61-201ENST00000410642 295 ntBASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 COTL1P1-201ENST00000422309 375 ntBASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 AC078809.1-201ENST00000427601 140 ntBASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 AC012308.1-201ENST00000451232 178 ntBASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 RNU6-579P-201ENST00000516879 102 ntBASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 RN7SKP209-201ENST00000516888 304 ntBASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 AP006245.1-201ENST00000522549 120 ntBASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 AC009163.5-201ENST00000575421 637 ntBASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 MIR5571-201ENST00000577998 113 ntBASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 AL162274.2-201ENST00000614406 332 ntBASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 AC048347.1-201ENST00000624621 427 ntBASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC87Q9NVE4 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.46□□□□□ -1.69
CCDC87Q9NVE4 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC4.46□□□□□ -1.7
CCDC87Q9NVE4 Y_RNA.539-201ENST00000384635 107 ntBASIC4.46□□□□□ -1.7
CCDC87Q9NVE4 SNORA1.3-201ENST00000384676 136 ntBASIC4.46□□□□□ -1.7
CCDC87Q9NVE4 AL603910.2-201ENST00000407268 136 ntBASIC4.46□□□□□ -1.7
CCDC87Q9NVE4 RN7SKP111-201ENST00000410349 271 ntBASIC4.46□□□□□ -1.7
CCDC87Q9NVE4 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC4.46□□□□□ -1.7
CCDC87Q9NVE4 S100A11P2-201ENST00000467589 312 ntBASIC4.46□□□□□ -1.7
CCDC87Q9NVE4 AP000870.1-201ENST00000472927 406 ntBASIC4.46□□□□□ -1.7
CCDC87Q9NVE4 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC87Q9NVE4 AC023824.2-201ENST00000566185 400 ntBASIC4.46□□□□□ -1.7
CCDC87Q9NVE4 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC87Q9NVE4 AC110491.1-201ENST00000562191 2010 ntBASIC4.46□□□□□ -1.7
CCDC87Q9NVE4 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC4.46□□□□□ -1.7
CCDC87Q9NVE4 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 RNU6-1159P-201ENST00000362933 107 ntBASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 SNORD113-8-201ENST00000363497 74 ntBASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 RNA5SP213-201ENST00000391031 106 ntBASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 RPS4XP3-201ENST00000398541 413 ntBASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 RNA5SP390-201ENST00000410191 113 ntBASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 AL445305.1-201ENST00000432577 575 ntBASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 AC006028.1-201ENST00000438379 402 ntBASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 AC096638.1-201ENST00000444678 216 ntBASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 MED28P2-201ENST00000475771 317 ntBASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 AC091874.1-201ENST00000511402 339 ntBASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 122.2 ms